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NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_15_12

Organism: NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_plum

partial RP 49 / 55 MC: 1 BSCG 0 / 51 ASCG 15 / 38 MC: 5
Location: comp(12031..12564)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-70 RpoD {ECO:0000313|EMBL:CEN88790.1}; EC=2.7.7.6 {ECO:0000313|EMBL:CEN88790.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae similarity UNIPROT
DB: UniProtKB
  • Identity: 50.3
  • Coverage: 177.0
  • Bit_score: 183
  • Evalue 2.00e-43
rpoD8; RNA polymerase factor sigma-70 RpoD (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 52.9
  • Coverage: 170.0
  • Bit_score: 178
  • Evalue 2.20e-42
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium termitidis CT1112 PF7_9CLOT">RepID=S0FPF7_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 50.0
  • Coverage: 178.0
  • Bit_score: 180
  • Evalue 1.60e-42

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Taxonomy

[Clostridium] sordellii → Peptoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 534
ATGAATGTATCGGATGTAGAAGAACTAATTGATCTATATGGAGATATTATTTATGGATTTTGTAGGAGACTTGCAGTAAATAAGTCCGATACAGATGATTTATATCAACAAACTTTTCTAAGAGCTGTAGAAATTCAAGAAAATATAGATATAGACAATAATCCAAAAGGATTTTTAATTTCTCTTGCAGTAAGTATATGGAAAAATACCATTCGTAAAAATGCTCGGCGTCATAGGATTGCGCCAACAGTCAGTATAGAGGGAAATGATTTATGGGATATATCAATCAATAGCATTAGTACAGAAGATATAGCTATTTCAAATGAGTTAATAGGTCAAGTAAATATTATAGTTTCTAACCTAAGTGATAAATTTAGGATACCGATTATTATGTATTATAATGGAGATATGTCTATATCAGAAATTGCAGCAACTTTAAAGTTACCACAGGGAACAATTAAAAGCCGTTTACATAAAGCTAGATTAATTATAAAAAAGGAATTGGAGGGGAAAGGCTATGAAGGATATAGATAA
PROTEIN sequence
Length: 178
MNVSDVEELIDLYGDIIYGFCRRLAVNKSDTDDLYQQTFLRAVEIQENIDIDNNPKGFLISLAVSIWKNTIRKNARRHRIAPTVSIEGNDLWDISINSISTEDIAISNELIGQVNIIVSNLSDKFRIPIIMYYNGDMSISEIAATLKLPQGTIKSRLHKARLIIKKELEGKGYEGYR*