ggKbase home page

NECEvent2014_4_3_Actinomyces_59_538_scaffold_22_3

Organism: NECEvent2014_4_3_Actinomyces_59_538_plum

near complete RP 52 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 3948..4283

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator n=2 Tax=Varibaculum cambriense RepID=UPI0003B4E422 similarity UNIREF
DB: UNIREF100
  • Identity: 80.0
  • Coverage: 110.0
  • Bit_score: 189
  • Evalue 1.70e-45
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA similarity UNIPROT
DB: UniProtKB
  • Identity: 80.6
  • Coverage: 108.0
  • Bit_score: 188
  • Evalue 6.70e-45
transcription factor WhiB similarity KEGG
DB: KEGG
  • Identity: 55.2
  • Coverage: 105.0
  • Bit_score: 138
  • Evalue 1.60e-30

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Varibaculum cambriense → Varibaculum → Actinomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 336
ATGAGCAGTATCGATCAGGATCAGACATGGGCCGCCCGCGCGCTGTGTGCGACGGAAGAACCGGACGCACTGTTTGTGCAGGGAGCTTCCCAACGCCAGGTACGAGTCAAATGCATGGCATGCGAAGTGCGCCTGGAATGTCTGGCAGATGCGTTGCAGTCGGAAGCTAACTTCGGCGTGTGGGGTGGACTGACTGAACGTGAACGGCGAGCCATGCTGCGTCACTACGACGACGTGGAGGATTGGTGGCAGTGGCTCAACGAATCTCAGGACGCGTTGGCGTGTGAACTACGAACACCGCGGATCCCGAAAGTTCTGGCCCACGTGCGCCGCTAG
PROTEIN sequence
Length: 112
MSSIDQDQTWAARALCATEEPDALFVQGASQRQVRVKCMACEVRLECLADALQSEANFGVWGGLTERERRAMLRHYDDVEDWWQWLNESQDALACELRTPRIPKVLAHVRR*