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NECEvent2014_5_8_Negativicoccus_succinicivorans_52_30_scaffold_7_321

Organism: NECEvent2014_5_8_Negativicoccus_succinicivorans_52_30_plum

partial RP 52 / 55 BSCG 0 / 51 ASCG 12 / 38 MC: 1
Location: comp(332022..335300)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1403945 species="Bacteria; F similarity UNIPROT
DB: UniProtKB
  • Identity: 97.9
  • Coverage: 999.99
  • Bit_score: 2110
  • Evalue 0.0
  • rbh
UPI0003D5BEB1 related cluster n=1 Tax=unknown RepID=UPI0003D5BEB1 similarity UNIREF
DB: UNIREF100
  • Identity: 97.9
  • Coverage: 999.99
  • Bit_score: 2110
  • Evalue 0.0
  • rbh
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 52.4
  • Coverage: 999.99
  • Bit_score: 1059
  • Evalue 0.0

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Taxonomy

Negativicoccus succinicivorans → Negativicoccus → Selenomonadales → Negativicutes → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3279
ATGAAATCCGGATTTTGGCAAAAAATAAAAAACTCCGCGCGTTTGCAGGAACTTTTGACAGCGTTTCAGACGCGCGGCGCGCAACTGATCCACGGCGGGAGTACGGCGCAGGAAGCGGTGCTGGTGGCGGCCGCCATGCAAGGCGGTTTGCGGCACGCGGTGATCATCGTGGAAGACGCGGCGACACGACAGAAATGGGAAGATGACCTGCGCTTTTTCGCGCCCGAAATTCCCGTTTACGAATTTCCGTGGGTCGAACCCGCGCCACAGCACGTGGCGGCGCAAAGCACGGAGACGCGGGCCTTACGCACGCGCGCGCTCGCGGCGTTACAGGCCGATGAGCCGGCCGCGGTCATCGCGACGATTCGTGAAGCGAGCGCTAAAATCGCCGCGCCGTCAGATCTCGCCAAGCAAATGACGACGCTTTCCTTAGGCGACGCGCGGGATCGGGAAGCATGGTTCGCGCGTTTGGTGGCGCAAGGCTACGCGCGTGAGGAGCAGGTGGAAAGTTGCGGCGAATTCGCGGTGCGCGGCGATATCGTCGATATTTACGCGCCGAATTACGAGTATCCGCTGCGGTTGGAATTTTTCGGCGATGAAATTGACAGCATTCGCAGTTTTGATCCGGTGACGCAACGTTCCGTCAGCACCTACGAGACGGTGACGTTGGCGCCGTTCGCGCTGCCCGAAGGCGCGAGCAGTTTGTTGGCGTACTTGGCGGACGGGGCGCTGATTTGCGATGAACCGAGCCGCACGGCGGAAGCGTTGCGCGCGCTGCGCAAAGAAGACGCGGGGAAAAGCAAACGTCACTGGTCGTGGACGGAACTTTTACGCGACTCGCACGCGCGCAGCACGGTTTTCTTCGCGCTGATTTCGTTGCGCGTGCCGGGCGCGGAGGTTCATGCGCGCTATCCGCTGGACGGTCGACCGGTGCCCACATTTCGTAACCAATGGCCGCATTTTGTGCAAACGGTGCAAAAATGGTCACGGCAAGGTTACGCGACGATCATTGCCGCGGCGGATGAAACGAAACGGGCGACACTGGAAACGAACCTGCGCGAGGCGGGCATTTTCCCGACGGACGAAGTGGCGGCGGGCATGGTCACGATCGTTGCGGAAAATGTCGATACCGGTTTTATGTGGCCGCAGGAAAAAGTGGTTGTGCTCGCCACCGCGGATATTTTCGGTACGCAGAAAAAACGGCGGCGCAGACACGTTCGTCACGGTAACGAGATCCGCTATTTCTCGGATCTGACGGAAGGCGACTACGTGGTGCACCAAGTGCACGGCATCGGTCGTTATACGGGTCTGGAAACGATTACGCTGAACGGCGCGAACCGCGATTATTTGCGGATCGAGTACGCGGGCGAGGATCGTCTGTTTTTGCCGGTTGAACGTATTCAGCAGCTGGAAAAATATATCGCGCCGGACGGAACGGTGCCGACACTGCACAAAATGGGCGGCGCGCAATGGACGAAAACAAAGGCCCGCGCGCAAAAATCGATTGATGATTTGGCGGATAAGTTGGTGGCGCTGTACGCCGAGCGTGAAGTGGAACCGGGTTTCGCGTTCCCGCCGGACACGCCCTGGCAGCGTGAATTTGAAGACGCGTTCATGTACGAAGAAACGCCCGATCAGTTGCAGGCCGCGGCCGAGATCAAAGCGTCAATGGAAAAGCCGCAGCCGATGGACCGACTGCTTTGCGGCGATGTCGGCTTCGGTAAGACGGAGGTCGCGATGCGCGCCGTTTTTAAGGCGGTTATGGCGAATAAACAGGTCGCCGTCTTGGTACCTACGACCGTTCTTTCGCAGCAGCATTATCGCACGTTTAGCGCGCGTTTGGGCCCGTTCGGCGTCAATGTGGCGGTATTGAATCGGTTCCGCAGCGCGGCGGAGAAAAAGGAAATTTTGCGCGGCGTCAAAAACGGCACGATTGATGTTTTAATCGGCACGCACGCGTTGTTGAATAAAGCGGTGCAATTCCGCGATTTGGGACTTTTGGTAGTCGATGAAGAGCAACGGTTCGGTGTGGCGCAAAAAGAAAAGTGGAAAGCGCGCAACACGATGGTTGATGTGCTCACGCTTTCGGCGACGCCGATCCCGCGTACGCTGCATATGTCGCTTGCCGGCGTGCGCGAGCTTTCGGTGATGTATACGGCGCCGGCGGATCGTCAGCCGGTGCAAACGTATGTGGTGGAAACATCGGACGCGATTTTGCGCGACGCGATTTTGGCGGAAGTGCAGCGCGGCGGGCAGGTCTATTTCGTGTACAATCGGATCGTGACAATTCGCGACATGGTGCGCAAGCTGGAAACGCTCGTCGGACCGTCGGTCACGTTTGATATCGCGCACGGCGCGATGTCCGGTGAAGAGCTGGAACGGGTCATGGCGGATTTTTACGCGGGCGATTTTGATGTGCTCGTCTGCACCAGTTTGATTGAAAACGGACTGGACCAGCCGAACGCCAATACCATTATCGTGTACGACGCGGATCGGCTCGGCCTTTCGCAGCTCTATCAGATGCGTGGGCGCGTAGGCCGTTCGGAGCGCAACGCGTTCGCGTATTTCCTGTACCGTCCGGATCAGATTATGAATGAGGCGGCGGAAAAACGTCTGTATGCGATTCGGGAATTCACCGAACTCGGCGCCGGATTTAAAATCGCGATGCGTGATTTGGAAATTCGCGGCGCGGGCAATTTGCTCGGCAGCGAACAGCACGGCAACATGGTCGGCGTCGGCTTCACAACGTATACGACGATGCTCGATGAGGCGATCGCCGCTCGACAGGGCGAACGCGCGCCGCACAAAACGGTGGCAGCGCCGCTCTTGGAACTGACCGCGGAAGCGTATATTCCGGATCGTTACATCGAGGATCCGGTGCAAAAACTCGAAATGTACCGGCGTTTGGCGGAAGTGGATACGGCGGTCGAAGTATCCGACTTGATCGACGAATTGGTGGACCGGTTCGGTACGCCGCCCGCGCCTGTGGAACAATTACTGCGCGTGGCGCAGTTGCGCGTGCTTGCGGCGAAAGCCGGCATCGGCAGTATTCGAGAGTTGCAAAACACGGTGGAGATCACGTGGAACCGACCGGAAGCGATGGCGACTTGGGACGTTGCCAAAGTGCCCGCGAAAGTGATGAAAAGTTTACGCTTTTTGCCAGGCGAGGTGCCGCGTGCTACAATAAATAAGTTACAGTGGAGTCATTCCGCGGTGGATTTTCTGCCGGAAATATTAGCGGCTTTTTTACAGGAAGATATTGCGCAAAGCAAGGAGTAA
PROTEIN sequence
Length: 1093
MKSGFWQKIKNSARLQELLTAFQTRGAQLIHGGSTAQEAVLVAAAMQGGLRHAVIIVEDAATRQKWEDDLRFFAPEIPVYEFPWVEPAPQHVAAQSTETRALRTRALAALQADEPAAVIATIREASAKIAAPSDLAKQMTTLSLGDARDREAWFARLVAQGYAREEQVESCGEFAVRGDIVDIYAPNYEYPLRLEFFGDEIDSIRSFDPVTQRSVSTYETVTLAPFALPEGASSLLAYLADGALICDEPSRTAEALRALRKEDAGKSKRHWSWTELLRDSHARSTVFFALISLRVPGAEVHARYPLDGRPVPTFRNQWPHFVQTVQKWSRQGYATIIAAADETKRATLETNLREAGIFPTDEVAAGMVTIVAENVDTGFMWPQEKVVVLATADIFGTQKKRRRRHVRHGNEIRYFSDLTEGDYVVHQVHGIGRYTGLETITLNGANRDYLRIEYAGEDRLFLPVERIQQLEKYIAPDGTVPTLHKMGGAQWTKTKARAQKSIDDLADKLVALYAEREVEPGFAFPPDTPWQREFEDAFMYEETPDQLQAAAEIKASMEKPQPMDRLLCGDVGFGKTEVAMRAVFKAVMANKQVAVLVPTTVLSQQHYRTFSARLGPFGVNVAVLNRFRSAAEKKEILRGVKNGTIDVLIGTHALLNKAVQFRDLGLLVVDEEQRFGVAQKEKWKARNTMVDVLTLSATPIPRTLHMSLAGVRELSVMYTAPADRQPVQTYVVETSDAILRDAILAEVQRGGQVYFVYNRIVTIRDMVRKLETLVGPSVTFDIAHGAMSGEELERVMADFYAGDFDVLVCTSLIENGLDQPNANTIIVYDADRLGLSQLYQMRGRVGRSERNAFAYFLYRPDQIMNEAAEKRLYAIREFTELGAGFKIAMRDLEIRGAGNLLGSEQHGNMVGVGFTTYTTMLDEAIAARQGERAPHKTVAAPLLELTAEAYIPDRYIEDPVQKLEMYRRLAEVDTAVEVSDLIDELVDRFGTPPAPVEQLLRVAQLRVLAAKAGIGSIRELQNTVEITWNRPEAMATWDVAKVPAKVMKSLRFLPGEVPRATINKLQWSHSAVDFLPEILAAFLQEDIAQSKE*