ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.38 Longest contig: 107.01 Kbp Bin length: 675.45 Mbp GC content: 62.23 %

Contigs count: 297285 Features count: 898841 rRNAs count: 64 tRNAs count: 5904

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 101-150 of 297285 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_4_scaffold_393535	3	1100 bp	57.64	2.73	112.64
13_1_40cm_4_scaffold_373477 Species: Cupriavidus pinatubonensis (50%)	2	1236 bp	70.39	2.67	112.62
13_1_40cm_4_scaffold_387160	3	1236 bp	62.70	1.82	112.62
13_1_40cm_4_scaffold_552708 Species: Sandaracinus amylolyticus (50%)	2	1055 bp	69.19	3.84	112.61
13_1_40cm_4_scaffold_243905 Species: RIFOXYD2_FULL_WWE3_43_10_curated (50%)	2	1556 bp	66.26	2.60	112.60
13_1_40cm_4_scaffold_338972 Species: Chthoniobacter flavus (50%)	2	1247 bp	58.38	2.41	112.59
13_1_40cm_4_scaffold_224863	7	1114 bp	62.30	2.56	112.57
13_1_40cm_4_scaffold_220523 Species: GWC2_Rokubacteria_70_16_curated (50%)	2	1130 bp	66.37	1.86	112.57
13_1_40cm_4_scaffold_172802	2	1298 bp	65.79	1.62	112.56
13_1_40cm_4_scaffold_165013 Species: Gemmatimonadetes bacterium KBS708 (66.67%)	3	1330 bp	65.41	4.17	112.56
13_1_40cm_4_scaffold_159212	3	1354 bp	69.94	3.21	112.56
13_1_40cm_4_scaffold_466605 Species: Myxococcus sp. (contaminant ex DSM 436) (50%)	2	1144 bp	73.69	1.31	112.50
13_1_40cm_4_scaffold_321827 Species: R_Acidobacteria_67_28 (50%)	2	1211 bp	58.30	2.61	112.47
13_1_40cm_4_scaffold_147475	3	1409 bp	57.42	2.13	112.42
13_1_40cm_4_scaffold_288303 Species: GWF1_Rhodobacteraceae_65_7_curated (50%)	2	1564 bp	62.15	35.49	112.40
13_1_40cm_4_scaffold_247449 Species: Rhizobium sp. CF080 (50%)	2	1033 bp	66.89	2.32	112.39
13_1_40cm_4_scaffold_132540 Phylum: Actinobacteria (66.67%)	3	1487 bp	64.96	3.93	112.37
13_1_40cm_4_scaffold_235401 Species: Afipia felis (50%)	2	1076 bp	59.94	3.49	112.36
13_1_40cm_4_scaffold_244372	2	1044 bp	54.50	7.90	112.36
13_1_40cm_4_scaffold_148198 Species: Candidatus Methylomirabilis oxyfera (50%)	2	1405 bp	70.32	2.14	112.31
13_1_40cm_4_scaffold_268874 Species: uncultured bacterium (50%)	2	1365 bp	56.56	2.64	112.31
13_1_40cm_4_scaffold_308389 Domain: Bacteria (66.67%)	3	1349 bp	57.60	2.45	112.31
13_1_40cm_4_scaffold_355507 Species: R_Acidobacteria_67_21 (50%)	2	1269 bp	68.87	1.89	112.29
13_1_40cm_4_scaffold_244813 Species: R_Betaproteobacteria_64_12 (50%)	2	1042 bp	58.25	2.59	112.28
13_1_40cm_4_scaffold_214974	3	1149 bp	67.54	2.74	112.27
13_1_40cm_4_scaffold_209429 Species: RLO_Betaproteobacteria_65_14 (50%)	2	1168 bp	68.24	2.05	112.24
13_1_40cm_4_scaffold_308430	2	1327 bp	64.05	1.92	112.13
13_1_40cm_4_scaffold_410123 Species: GWC2_Rokubacteria_70_16_curated (50%)	2	1164 bp	62.11	1.80	112.11
13_1_40cm_4_scaffold_249645 Species: uncultured Acidobacteria bacterium (50%)	2	1025 bp	70.54	3.22	112.10
13_1_40cm_4_scaffold_242019 Species: Mycobacterium xenopi (50%)	2	1052 bp	67.87	3.99	112.07
13_1_40cm_4_scaffold_138115 Species: Candidatus Entotheonella sp. TSY1 (50%)	2	1457 bp	67.33	2.16	112.01
13_1_40cm_4_scaffold_388256 Species: Kyrpidia tusciae (50%)	2	1294 bp	71.25	2.90	111.98
13_1_40cm_4_scaffold_232129 Species: RLO_Rokubacteria_71_22 (50%)	2	1088 bp	66.27	7.86	111.95
13_1_40cm_4_scaffold_584849 Species: Pyrinomonas methylaliphatogenes (50%)	2	1048 bp	53.24	2.29	111.93
13_1_40cm_4_scaffold_249766 Species: R_Rokubacteria_68_19 (50%)	2	1024 bp	61.23	2.49	111.91
13_1_40cm_4_scaffold_237069 Species: Desulfotomaculum kuznetsovii (50%)	2	1070 bp	61.31	2.38	111.87
13_1_40cm_4_scaffold_261010 Species: Pseudogymnoascus pannorum (50%)	2	1424 bp	68.26	7.48	111.87
13_1_40cm_4_scaffold_313475 Species: uncultured archaeon (50%)	2	1379 bp	58.30	8.92	111.82
13_1_40cm_4_scaffold_378642 Species: Burkholderia pseudomallei (50%)	2	1079 bp	57.92	2.92	111.77
13_1_40cm_4_scaffold_403765 Species: Micromonospora aurantiaca (50%)	2	1109 bp	67.99	2.57	111.72
13_1_40cm_4_scaffold_242538 Species: Chthoniobacter flavus (50%)	2	1050 bp	50.48	2.00	111.71
13_1_40cm_4_scaffold_170264 Species: Caldilinea aerophila (50%)	2	1308 bp	70.49	1.61	111.70
13_1_40cm_4_scaffold_256352	2	1002 bp	52.10	5.09	111.68
13_1_40cm_4_scaffold_155072 Species: RBG_16_RIF03_38_10_curated (50%)	2	1373 bp	61.69	3.50	111.65
13_1_40cm_4_scaffold_217108 Species: Hyphomicrobium denitrificans (50%)	2	1142 bp	68.04	2.10	111.65
13_1_40cm_4_scaffold_254654 Species: uncultured Thiohalocapsa sp. PB-PSB1 (50%)	2	1008 bp	70.04	4.17	111.61
13_1_40cm_4_scaffold_302590 Species: R_NC10_66_22 (50%)	2	1441 bp	67.38	1.87	111.59
13_1_40cm_4_scaffold_233689 Species: GWC2_Rokubacteria_70_16_curated (50%)	2	1608 bp	67.72	2.33	111.57
13_1_40cm_4_scaffold_546336 Species: RBG_13_OP11_40_7b_curated (50%)	2	1017 bp	70.60	2.21	111.50
13_1_40cm_4_scaffold_245891 Species: GWC2_Pelobacteraceae_58_13_curated (50%)	2	1564 bp	60.87	3.55	111.45

Displaying items 101-150 of 297285 in total

13_1_40cm_4_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40cm_4_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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