ggKbase home page
Advanced Search
Search Help

13_1_40cm_4_UNK

In projects: 13_1_40CM_4  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.38 Longest contig: 107.01 Kbp Bin length: 675.45 Mbp GC content: 62.23 %
Contigs count: 297285 Features count: 898841 rRNAs count: 64 tRNAs count: 5904

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Displaying items 297001-297050 of 297285 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_4_scaffold_153508 4 3840 bp 60.00 42.21 57.11
13_1_40cm_4_scaffold_212820
Species: R_Nitrospirae_62_14 (66.67%)
3 2074 bp 64.56 42.24 100.39
13_1_40cm_4_scaffold_295969
Species: CSP1_3_Armatimonadetes (100%)
1 1469 bp 64.06 42.26 89.65
13_1_40cm_4_scaffold_237577 3 1068 bp 59.46 42.28 95.22
13_1_40cm_4_scaffold_15517 8 5080 bp 63.01 42.34 75.02
13_1_40cm_4_scaffold_14087
Domain: Bacteria (80%)
5 4848 bp 59.30 42.35 95.54
13_1_40cm_4_scaffold_47715
Phylum: Nitrospirae (50%)
8 7435 bp 64.52 42.38 92.97
13_1_40cm_4_scaffold_88155
Species: R_Rokubacteria_73_56 (50%)
2 1818 bp 74.64 42.41 99.50
13_1_40cm_4_scaffold_172579 3 2027 bp 62.65 42.44 82.59
13_1_40cm_4_scaffold_168429
Species: GWC2_Gemmatimonadetes_71_10_curated (100%)
1 1316 bp 67.25 42.52 82.52
13_1_40cm_4_scaffold_58033
Phylum: Nitrospirae (66.67%)
6 4126 bp 61.71 42.56 74.45
13_1_40cm_4_scaffold_8284
Species: RLO_Rokubacteria_71_22 (50%)
10 7229 bp 71.42 42.56 96.94
13_1_40cm_4_scaffold_39054
Species: R_Nitrospirae_62_14 (71.43%)
7 5972 bp 65.15 42.57 84.04
13_1_40cm_4_scaffold_86040 4 3815 bp 63.80 42.60 94.99
13_1_40cm_4_scaffold_63484
Phylum: Proteobacteria (57.14%)
7 4638 bp 71.28 42.62 94.44
13_1_40cm_4_scaffold_251864 2 1017 bp 64.31 42.63 100.30
13_1_40cm_4_scaffold_14017
Species: R_Nitrospirae_62_14 (50%)
12 7329 bp 64.29 42.64 93.57
13_1_40cm_4_scaffold_241474
Species: R_Nitrospirae_62_14 (66.67%)
3 1054 bp 59.49 42.69 64.61
13_1_40cm_4_scaffold_145049 2 1940 bp 63.92 42.73 90.62
13_1_40cm_4_scaffold_43905
Phylum: Rokubacteria (66.67%)
3 2554 bp 69.22 42.76 94.44
13_1_40cm_4_scaffold_243244 3 2370 bp 51.98 42.77 53.42
13_1_40cm_4_scaffold_66081
Species: CSP1_6_Rokubacteria (66.67%)
3 2487 bp 74.83 42.83 98.19
13_1_40cm_4_scaffold_54360 4 4003 bp 58.11 42.89 87.76
13_1_40cm_4_scaffold_101473 6 3884 bp 61.53 42.91 89.93
13_1_40cm_4_scaffold_48991
Phylum: Nitrospirae (50%)
6 4551 bp 62.54 42.93 82.80
13_1_40cm_4_scaffold_110116
Species: Candidatus Nitrospira defluvii (50%)
4 3324 bp 57.79 42.97 84.21
13_1_40cm_4_scaffold_55475
Species: R_Nitrospirae_62_14 (60%)
5 3747 bp 64.29 42.99 94.48
13_1_40cm_4_scaffold_98474
Species: R_Rokubacteria_68_19 (50%)
2 1720 bp 63.14 42.99 80.06
13_1_40cm_4_scaffold_256978
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (50%)
2 1000 bp 63.20 43.05 94.50
13_1_40cm_4_scaffold_376775 3 2093 bp 66.13 43.14 97.04
13_1_40cm_4_scaffold_213902
Species: Candidatus Brocadia sinica (50%)
2 1153 bp 63.92 43.19 100.17
13_1_40cm_4_scaffold_56321
Species: R_Nitrospirae_62_14 (60%)
5 4184 bp 63.50 43.20 83.96
13_1_40cm_4_scaffold_17025
Phylum: Nitrospirae (60%)
5 4474 bp 62.29 43.22 99.37
13_1_40cm_4_scaffold_251563 2 1019 bp 62.22 43.28 79.20
13_1_40cm_4_scaffold_301253
Species: Candidatus Nitrospira defluvii (50%)
4 2319 bp 63.22 43.29 83.57
13_1_40cm_4_scaffold_13138
Phylum: Rokubacteria (100%)
7 7494 bp 67.25 43.29 87.59
13_1_40cm_4_scaffold_193264
Species: R_Nitrospirae_62_14 (100%)
1 1223 bp 67.38 43.30 94.19
13_1_40cm_4_scaffold_217589 3 3006 bp 60.18 43.31 56.79
13_1_40cm_4_scaffold_184934 2 2470 bp 52.75 43.33 19.07
13_1_40cm_4_scaffold_203038 3 1190 bp 65.04 43.36 94.03
13_1_40cm_4_scaffold_11531
Phylum: Nitrospirae (60%)
10 8446 bp 65.59 43.44 88.84
13_1_40cm_4_scaffold_38719
Class: Actinobacteria (50%)
4 2710 bp 64.39 43.45 97.20
13_1_40cm_4_scaffold_58241 3 2230 bp 65.25 43.52 89.51
13_1_40cm_4_scaffold_232240 1 1088 bp 64.71 43.57 99.82
13_1_40cm_4_scaffold_63440
Species: R_Rokubacteria_71_18 (100%)
2 2775 bp 65.48 43.60 95.14
13_1_40cm_4_scaffold_42037
Phylum: Nitrospirae (75%)
8 6423 bp 64.85 43.69 98.04
13_1_40cm_4_scaffold_27361
Phylum: Rokubacteria (62.5%)
8 4869 bp 69.77 43.77 88.17
13_1_40cm_4_scaffold_378168
Species: Granulicella mallensis (50%)
2 1890 bp 52.75 43.85 36.51
13_1_40cm_4_scaffold_364369 2 1292 bp 61.46 43.89 81.73
13_1_40cm_4_scaffold_26060
Domain: Bacteria (100%)
6 5597 bp 69.14 43.89 97.71
Displaying items 297001-297050 of 297285 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.