ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.06 Longest contig: 101.74 Kbp Bin length: 641.38 Mbp GC content: 62.89 %

Contigs count: 302485 Features count: 847366 rRNAs count: 45 tRNAs count: 5902

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 51-100 of 302485 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_2_20cm_2_scaffold_298338 Species: Paenibacillus sp. FSL H7-0737 (50%)	2	1021 bp	57.00	2.50	114.01
13_2_20cm_2_scaffold_287054 Species: Methyloversatilis universalis (50%)	2	1048 bp	65.27	1.72	113.93
13_2_20cm_2_scaffold_170370 Species: Sorangium cellulosum (50%)	2	1399 bp	68.41	5.25	113.87
13_2_20cm_2_scaffold_275294 Species: Micromonospora sp. ATCC 39149 (50%)	2	1078 bp	74.03	3.06	113.82
13_2_20cm_2_scaffold_267914 Species: uncultured bacterium (100%)	2	1097 bp	58.80	12.85	113.77
13_2_20cm_2_scaffold_203091 Domain: Bacteria (66.67%)	3	1282 bp	69.81	4.80	113.73
13_2_20cm_2_scaffold_175022 Species: Ktedonobacter racemifer (50%)	2	1380 bp	48.55	2.93	113.70
13_2_20cm_2_scaffold_197787 Species: Streptomonospora alba (50%)	2	1299 bp	72.44	4.50	113.63
13_2_20cm_2_scaffold_246676 Species: Isosphaera pallida (50%)	2	1155 bp	61.04	2.34	113.51
13_2_20cm_2_scaffold_271843 Phylum: Actinobacteria (66.67%)	3	1087 bp	68.17	5.24	113.43
13_2_20cm_2_scaffold_289084	3	1043 bp	55.99	1.58	113.33
13_2_20cm_2_scaffold_242973 Species: RBG_16_RIF_CHLX_72_14_curated (50%)	2	1165 bp	70.30	2.45	113.30
13_2_20cm_2_scaffold_300800	3	1016 bp	57.58	2.81	113.29
13_2_20cm_2_scaffold_247576 Species: Stigmatella aurantiaca (50%)	2	1153 bp	68.17	3.12	113.18
13_2_20cm_2_scaffold_281931	2	1061 bp	58.91	1.70	113.10
13_2_20cm_2_scaffold_203522 Species: Chthoniobacter flavus (66.67%)	3	1281 bp	58.16	1.87	112.88
13_2_20cm_2_scaffold_289580 Phylum: Acidobacteria (66.67%)	3	1042 bp	51.15	2.30	112.57
13_2_20cm_2_scaffold_174825 Domain: Bacteria (50%)	4	1380 bp	61.01	2.93	112.54
13_2_20cm_2_scaffold_141565 Species: Chthoniobacter flavus (50%)	2	1531 bp	54.93	2.06	112.48
13_2_20cm_2_scaffold_316550 Species: Sorangium cellulosum (50%)	2	1438 bp	64.26	6.26	112.24
13_2_20cm_2_scaffold_194627 Species: Niastella koreensis (50%)	2	1310 bp	43.51	1.37	112.21
13_2_20cm_2_scaffold_177784 Species: Chthoniobacter flavus (50%)	2	1369 bp	58.07	10.52	112.20
13_2_20cm_2_scaffold_294709	3	1030 bp	57.86	3.35	112.14
13_2_20cm_2_scaffold_224211 Species: Conexibacter woesei (50%)	2	1218 bp	71.35	4.68	112.07
13_2_20cm_2_scaffold_207198 Species: Chthoniobacter flavus (50%)	2	1269 bp	55.00	6.15	112.06
13_2_20cm_2_scaffold_284237	3	1055 bp	54.79	1.56	112.04
13_2_20cm_2_scaffold_246975 Species: Haliscomenobacter hydrossis (50%)	2	1155 bp	52.12	2.47	111.95
13_2_20cm_2_scaffold_170782 Species: Ktedonobacter racemifer (50%)	2	1397 bp	51.47	1.72	111.88
13_2_20cm_2_scaffold_302893 Species: Candidatus Koribacter versatilis (50%)	2	1011 bp	55.19	1.93	111.87
13_2_20cm_2_scaffold_200654 Species: RBG_19FT_COMBO_Chloroflexi_47_15_curated (50%)	2	1290 bp	55.81	1.86	111.86
13_2_20cm_2_scaffold_140790 Species: Chthoniobacter flavus (66.67%)	3	1535 bp	54.07	2.35	111.79
13_2_20cm_2_scaffold_199454 Species: marine sediment metagenome (50%)	2	1294 bp	58.27	2.32	111.75
13_2_20cm_2_scaffold_137054 Species: RLO_RIF_CHLX_71_12 (50%)	2	1555 bp	67.46	9.84	111.70
13_2_20cm_2_scaffold_191019	4	1322 bp	55.90	3.52	111.65
13_2_20cm_2_scaffold_154097 Species: Conexibacter woesei (50%)	4	1470 bp	68.78	1.63	111.63
13_2_20cm_2_scaffold_304082 Species: Ktedonobacter racemifer (66.67%)	3	1008 bp	57.34	2.08	111.61
13_2_20cm_2_scaffold_246483 Species: CSP1_6_Rokubacteria (50%)	2	1156 bp	66.44	4.28	111.59
13_2_20cm_2_scaffold_281426	2	1062 bp	67.42	2.68	111.58
13_2_20cm_2_scaffold_274177 Species: Desulfovibrio africanus (50%)	2	1081 bp	67.25	4.72	111.56
13_2_20cm_2_scaffold_196943 Species: R_Nitrospirae_62_14 (66.67%)	3	1302 bp	56.53	2.76	111.52
13_2_20cm_2_scaffold_221230 Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)	2	1227 bp	62.02	2.81	111.49
13_2_20cm_2_scaffold_238784 Species: Acidobacterium capsulatum (50%)	2	1177 bp	55.82	2.17	111.39
13_2_20cm_2_scaffold_272357 Domain: Bacteria (75%)	4	1086 bp	67.13	1.66	111.33
13_2_20cm_2_scaffold_296071 Domain: Bacteria (66.67%)	3	1027 bp	68.35	2.78	111.30
13_2_20cm_2_scaffold_277060 Species: Roseiflexus castenholzii (50%)	2	1073 bp	69.15	2.66	111.28
13_2_20cm_2_scaffold_234462 Species: R_Rokubacteria_71_18 (50%)	2	1190 bp	61.43	2.52	111.18
13_2_20cm_2_scaffold_137525 Species: Fibrisoma limi (50%)	2	1552 bp	67.07	8.41	111.15
13_2_20cm_2_scaffold_210936 Species: RBG_16_Actinobacteria_68_12_curated (66.67%)	3	1258 bp	70.27	6.92	111.13
13_2_20cm_2_scaffold_224882 Species: Helicobacter cetorum (50%)	2	1216 bp	58.22	3.33	111.02
13_2_20cm_2_scaffold_227777 Species: Pedosphaera parvula (50%)	2	1208 bp	58.44	3.23	111.01

Displaying items 51-100 of 302485 in total

13_2_20cm_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_2_20cm_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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