ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.06 Longest contig: 101.74 Kbp Bin length: 641.38 Mbp GC content: 62.89 %

Contigs count: 302485 Features count: 847366 rRNAs count: 45 tRNAs count: 5902

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 301901-301950 of 302485 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_2_20cm_2_scaffold_270833 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1090 bp	64.40	7.02	105.41
13_2_20cm_2_scaffold_300530 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1016 bp	71.36	6.20	105.41
13_2_20cm_2_scaffold_104168 Phylum: Gemmatimonadetes (66.67%)	3	1773 bp	64.13	4.99	105.41
13_2_20cm_2_scaffold_137710 Species: Pyrinomonas methylaliphatogenes (50%)	2	1551 bp	55.13	4.93	105.42
13_2_20cm_2_scaffold_109146 Species: RHI_Verrucumicrobia_41_10 (50%)	2	1733 bp	57.76	4.85	105.42
13_2_20cm_2_scaffold_76731 Order: Myxococcales (100%)	3	2046 bp	67.99	4.69	105.43
13_2_20cm_2_scaffold_238681	3	1178 bp	55.52	2.29	105.43
13_2_20cm_2_scaffold_184876 Species: Bradyrhizobium japonicum (50%)	2	1343 bp	64.26	2.79	105.44
13_2_20cm_2_scaffold_259322 Species: Mycobacterium lentiflavum (50%)	2	1121 bp	66.19	8.43	105.44
13_2_20cm_2_scaffold_213802 Phylum: Acidobacteria (66.67%)	3	1249 bp	65.81	6.85	105.44
13_2_20cm_2_scaffold_288711 Domain: Bacteria (100%)	3	1044 bp	54.79	3.30	105.46
13_2_20cm_2_scaffold_221586	3	1630 bp	72.02	5.61	105.46
13_2_20cm_2_scaffold_127375 Species: Bradyrhizobium sp. STM 3843 (50%)	2	1610 bp	57.33	5.03	105.47
13_2_20cm_2_scaffold_281809 Species: Frankia sp. EuI1c (50%)	2	1061 bp	66.64	3.25	105.47
13_2_20cm_2_scaffold_36627 Phylum: Proteobacteria (66.67%)	3	2853 bp	60.78	2.79	105.47
13_2_20cm_2_scaffold_104225 Species: Candidatus Koribacter versatilis (66.67%)	3	1772 bp	56.77	2.88	105.47
13_2_20cm_2_scaffold_131410 Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)	2	1587 bp	57.15	3.40	105.48
13_2_20cm_2_scaffold_199391	3	1294 bp	63.99	6.03	105.49
13_2_20cm_2_scaffold_167359	3	2058 bp	66.52	4.74	105.49
13_2_20cm_2_scaffold_107485 Order: Rhizobiales (66.67%)	3	1746 bp	58.02	3.18	105.50
13_2_20cm_2_scaffold_118676 Domain: Bacteria (100%)	4	3000 bp	69.47	3.65	105.50
13_2_20cm_2_scaffold_292601 Domain: Bacteria (100%)	3	1035 bp	70.14	2.32	105.51
13_2_20cm_2_scaffold_285524 Domain: Bacteria (66.67%)	3	1052 bp	54.94	10.12	105.51
13_2_20cm_2_scaffold_257994 Species: uncultured bacterium BAC10-10 (50%)	4	1922 bp	56.35	3.75	105.52
13_2_20cm_2_scaffold_170884 Species: Acetobacteraceae bacterium AT-5844 (50%)	2	1396 bp	60.74	1.72	105.52
13_2_20cm_2_scaffold_301078 Domain: Bacteria (66.67%)	3	1015 bp	66.80	3.84	105.52
13_2_20cm_2_scaffold_245119 Species: Bradyrhizobium elkanii (50%)	2	1160 bp	64.31	6.72	105.52
13_2_20cm_2_scaffold_278774 Species: Bradyrhizobium sp. LTSPM299 (50%)	2	1069 bp	66.79	4.07	105.52
13_2_20cm_2_scaffold_136500 Species: RBG_16_Actinobacteria_68_12_curated (50%)	2	1558 bp	69.58	2.60	105.52
13_2_20cm_2_scaffold_293839 Species: RBG_16_Acidobacteria_68_9_curated (100%)	2	1032 bp	71.22	12.50	105.52
13_2_20cm_2_scaffold_252556 Phylum: Candidatus Saccharibacteria (66.67%)	3	1140 bp	49.30	1.32	105.53
13_2_20cm_2_scaffold_266802 Domain: Bacteria (100%)	3	1100 bp	73.00	4.50	105.55
13_2_20cm_2_scaffold_281133 Species: Acidobacterium capsulatum (50%)	2	1063 bp	57.67	3.39	105.55
13_2_20cm_2_scaffold_187624 Species: BJP_IG2102_BRC1_58_13 (50%)	2	1333 bp	67.29	3.94	105.55
13_2_20cm_2_scaffold_117857 Species: uncultured bacterium (50%)	2	1671 bp	53.98	3.05	105.57
13_2_20cm_2_scaffold_249753 Species: Streptomyces pluripotens (50%)	2	1921 bp	70.43	3.12	105.57
13_2_20cm_2_scaffold_255709 Domain: Bacteria (66.67%)	3	1131 bp	68.44	2.65	105.57
13_2_20cm_2_scaffold_205826 Order: Planctomycetales (66.67%)	3	1273 bp	57.89	1.41	105.58
13_2_20cm_2_scaffold_184400	2	1344 bp	59.97	5.92	105.58
13_2_20cm_2_scaffold_283531 Species: uncultured bacterium (50%)	2	1057 bp	55.91	1.42	105.58
13_2_20cm_2_scaffold_104089 Species: GWA2_Bacteroidetes_30_7_curated (50%)	2	1773 bp	57.81	8.04	105.58
13_2_20cm_2_scaffold_298846 Species: R_Betaproteobacteria_62_17 (50%)	2	1020 bp	69.31	3.53	105.59
13_2_20cm_2_scaffold_167056 Species: Candidatus Methylomirabilis oxyfera (50%)	4	2520 bp	65.24	3.69	105.60
13_2_20cm_2_scaffold_159313 Species: RBG_16_Actinobacteria_67_10_curated (50%)	2	1446 bp	67.08	3.94	105.60
13_2_20cm_2_scaffold_278143 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1071 bp	64.05	3.78	105.60
13_2_20cm_2_scaffold_226064 Phylum: Acidobacteria (66.67%)	3	1213 bp	66.53	4.82	105.61
13_2_20cm_2_scaffold_227092	2	1210 bp	61.74	1.86	105.62
13_2_20cm_2_scaffold_227134 Species: mine drainage metagenome (50%)	2	1210 bp	68.76	13.02	105.62
13_2_20cm_2_scaffold_272456 Phylum: Acidobacteria (100%)	3	1085 bp	55.67	4.15	105.62
13_2_20cm_2_scaffold_294239 Species: R_Nitrospirae_62_14 (100%)	2	1031 bp	57.32	4.36	105.63

Displaying items 301901-301950 of 302485 in total

13_2_20cm_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_2_20cm_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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