ggKbase home page

13_1_40cm_2_scaffold_12807_17

Organism: 13_1_40cm_2_UNK

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Location: comp(11504..12559)

Top 3 Functional Annotations

Value Algorithm Source
rpoN; RNA polymerase, sigma 54/sigma 60 factor; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 73.6
  • Coverage: 311.0
  • Bit_score: 460
  • Evalue 1.70e-126
RNA polymerase sigma-54 factor id=1759808 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 73.3
  • Coverage: 311.0
  • Bit_score: 448
  • Evalue 8.10e-123
rpoN; RNA polymerase sigma-54 factor RpoN similarity KEGG
DB: KEGG
  • Identity: 44.9
  • Coverage: 345.0
  • Bit_score: 282
  • Evalue 2.20e-73

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Deltaproteobacteria_60_16 → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1056
ATGGCGTTAGAGATTCGACAGGTCCAGAAGTTAGCTCAGCAGCTGGTGATGACGCCGCAGCTGCAGCAGGCGATCAAGCTGTTGCAACTTTCCCGCATAGAGCTGGAGGAAATGATCTCGCAGGAGCTCCAGGAGAATCCCGCGTTGGAGGAAGCGCCTGTCCAAGAAGCGGAAAACCGAGAGGAAGTCCATGAGGAGGGCCGAGACGAAGTGCCAGAGCCGCCAATAGAGCCGATGCTTAACCGGGAACTGTCAACGGCGGATAAGATCGGCACCCTCGATTGGCAAGAATACATGGACACCCACACCAATTCGATCCACGGATCTCTGACCGCTGAGGCTGACCGAGAGGAGGGTGAAGGTCCGCCTTCGTGGGAAAATACTTTAACCAAGACAACATCACTTGAAGACCATCTGGTTTGGCAGCTCCGCCTCTCTCGGCTCAGGGAGCACGAAGAGGGGATCGGCCTCTACATCATAGGGAACCTAGATCCCAATGGTTATCTCGCGCTCTCTTTCGAAGAGCTCTGTCAGGCCACCGGCGCATCGCCAGAAGACGCGGAAAGAGTCTTGAAACAGATCCAATTCTTTGATCCTGTAGGTGTCGCAGCTCGTGACCTCAAAGAATGTCTCCTGATTCAGCTGGAGAACCTCAAGCTCAACGGCAGTTTGGCCGCGCGGCTCGTTGCGGGTCATCTGGGTCAACTGGAGACCAGACGTTACGAGAAACTGGCCCGAGAACTGAGCGTCTCGATTGAGGAGATCATCGCGGCTTCTCAACTCATCGCTTCTCTGGAACCGAAACCGGCGCGAGGTTTCGATCAAGAAGAAGTCCGCACGATCATCCCGGATGTCTCCGTGGAGAAGATCGGCGATGAATACGTGGTGTTTCTCAACGAAGAAGGAGTCCCGCGCCTTCGGGTCAGTTCCGTCNNNNNNNNGCCGCCAGTATCTCCAAGAAAAGGTACGAGCAGCTACATGGTTGATCAAGAGTATTCAACAGCGACAGCAGACTCTTTACCGGGTGACCCAATGCATCTTCAAATTTCAACATGA
PROTEIN sequence
Length: 352
MALEIRQVQKLAQQLVMTPQLQQAIKLLQLSRIELEEMISQELQENPALEEAPVQEAENREEVHEEGRDEVPEPPIEPMLNRELSTADKIGTLDWQEYMDTHTNSIHGSLTAEADREEGEGPPSWENTLTKTTSLEDHLVWQLRLSRLREHEEGIGLYIIGNLDPNGYLALSFEELCQATGASPEDAERVLKQIQFFDPVGVAARDLKECLLIQLENLKLNGSLAARLVAGHLGQLETRRYEKLARELSVSIEEIIAASQLIASLEPKPARGFDQEEVRTIIPDVSVEKIGDEYVVFLNEEGVPRLRVSSVXXXPPVSPRKGTSSYMVDQEYSTATADSLPGDPMHLQIST*