ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.10 Longest contig: 114.33 Kbp Bin length: 743.12 Mbp GC content: 62.33 %

Contigs count: 354474 Features count: 988742 rRNAs count: 48 tRNAs count: 6335

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 354201-354250 of 354474 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_2_scaffold_212203 Domain: Bacteria (50%)	4	1317 bp	65.07	2.62	109.34
13_1_40cm_2_scaffold_239111	3	1240 bp	57.74	1.94	109.36
13_1_40cm_2_scaffold_286334 Species: RLO_RIF_CHLX_71_12 (50%)	2	1133 bp	67.26	3.44	109.36
13_1_40cm_2_scaffold_173877 Species: CSP1_6_Rokubacteria (50%)	2	1451 bp	67.68	3.82	109.37
13_1_40cm_2_scaffold_747293 Species: Streptomyces iranensis (50%)	2	1045 bp	63.92	2.58	109.38
13_1_40cm_2_scaffold_188255 Species: Chthoniobacter flavus (50%)	4	2014 bp	57.65	4.72	109.38
13_1_40cm_2_scaffold_311223	4	1086 bp	67.40	3.73	109.39
13_1_40cm_2_scaffold_116808 Species: Singulisphaera acidiphila (50%)	2	1766 bp	59.85	2.46	109.40
13_1_40cm_2_scaffold_284972 Species: Hydrocarboniphaga effusa (100%)	2	1135 bp	58.33	2.25	109.43
13_1_40cm_2_scaffold_578973 Species: RBG_16_Betaproteobacteria_64_18_curated (50%)	2	1039 bp	65.64	1.73	109.43
13_1_40cm_2_scaffold_339005 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)	2	1033 bp	66.60	1.74	109.49
13_1_40cm_2_scaffold_379771 Species: R_Rokubacteria_73_56 (66.67%)	3	1441 bp	68.36	9.74	109.51
13_1_40cm_2_scaffold_141314 Species: GWA2_Elusimicrobia_51_34_curated (50%)	2	1605 bp	54.52	5.33	109.53
13_1_40cm_2_scaffold_446865 Species: R_Rokubacteria_73_56 (50%)	2	1383 bp	69.20	9.44	109.54
13_1_40cm_2_scaffold_304855 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (100%)	2	1098 bp	65.57	2.19	109.56
13_1_40cm_2_scaffold_316529 Species: R_Acidobacteria_65_29 (50%)	2	1076 bp	64.13	1.95	109.57
13_1_40cm_2_scaffold_264831 Species: uncultured archaeon A07HR67 (50%)	2	1177 bp	69.24	2.68	109.60
13_1_40cm_2_scaffold_465772 Species: Pyrinomonas methylaliphatogenes (66.67%)	3	1812 bp	66.61	16.72	109.60
13_1_40cm_2_scaffold_256867 Species: GWA2_Berkelbacteria_35_9 (50%)	2	1196 bp	53.93	3.14	109.62
13_1_40cm_2_scaffold_148063	4	1568 bp	65.11	1.91	109.63
13_1_40cm_2_scaffold_545316 Species: R_Betaproteobacteria_68_150 (50%)	2	1111 bp	66.52	2.84	109.63
13_1_40cm_2_scaffold_199673 Species: Bradyrhizobium sp. DFCI-1 (50%)	2	1357 bp	59.25	2.21	109.65
13_1_40cm_2_scaffold_360512 Species: Candidatus Solibacter usitatus (50%)	2	1387 bp	54.87	3.03	109.66
13_1_40cm_2_scaffold_221345 Species: R_Acidobacteria_68_18 (50%)	2	1573 bp	56.01	1.53	109.66
13_1_40cm_2_scaffold_259048 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (100%)	2	1190 bp	62.35	1.64	109.66
13_1_40cm_2_scaffold_306435 Species: Aquimarina atlantica (50%)	2	1534 bp	58.87	5.08	109.71
13_1_40cm_2_scaffold_209399	2	1326 bp	50.23	4.07	109.73
13_1_40cm_2_scaffold_669873 Species: Sandaracinus amylolyticus (100%)	2	1017 bp	72.17	4.42	109.74
13_1_40cm_2_scaffold_282005 Class: Deltaproteobacteria (66.67%)	3	1643 bp	69.39	3.20	109.74
13_1_40cm_2_scaffold_238741 Species: Burkholderia cenocepacia (50%)	2	1241 bp	65.43	2.78	109.75
13_1_40cm_2_scaffold_370578 Species: CG_Syntroph_01 (50%)	2	1446 bp	63.35	1.97	109.75
13_1_40cm_2_scaffold_612109	4	1097 bp	67.46	1.50	109.75
13_1_40cm_2_scaffold_443934 Species: Candidatus Solibacter usitatus (50%)	2	1189 bp	53.41	2.65	109.76
13_1_40cm_2_scaffold_321417 Species: RBG_19FT_COMBO_Zixibacteria_42_43_curated (50%)	2	1607 bp	68.20	11.57	109.77
13_1_40cm_2_scaffold_427471 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1320 bp	61.14	2.61	109.77
13_1_40cm_2_scaffold_360475 Phylum: Proteobacteria (66.67%)	3	1492 bp	61.93	1.81	109.79
13_1_40cm_2_scaffold_325300 Species: Streptomyces avermitilis (50%)	2	1060 bp	67.83	5.38	109.81
13_1_40cm_2_scaffold_300407 Species: Streptomyces clavuligerus (50%)	2	1106 bp	66.27	4.07	109.85
13_1_40cm_2_scaffold_315121	3	1079 bp	59.22	5.42	109.92
13_1_40cm_2_scaffold_308625 Species: Anaeromyxobacter sp. K (50%)	2	1091 bp	72.41	8.11	109.99
13_1_40cm_2_scaffold_219337 Species: RBG_13_Planctomycetes_62_9_curated (50%)	2	1849 bp	56.68	2.03	110.01
13_1_40cm_2_scaffold_196136	3	1369 bp	66.47	2.85	110.01
13_1_40cm_2_scaffold_572204 Species: RLO_Betaproteobacteria_65_14 (50%)	2	1887 bp	67.20	12.72	110.02
13_1_40cm_2_scaffold_283970 Species: RLO_RIF_CHLX_71_12 (50%)	2	1137 bp	67.63	3.69	110.03
13_1_40cm_2_scaffold_198134 Species: RIFOXYB2_FULL_WOR_2_38_16_curated (50%)	2	1835 bp	63.76	1.96	110.03
13_1_40cm_2_scaffold_316300 Species: R_OP11_Gottesmanbacteria_39_12b (50%)	2	1077 bp	67.50	1.67	110.03
13_1_40cm_2_scaffold_332443 Species: Pyrinomonas methylaliphatogenes (50%)	2	1047 bp	57.40	2.58	110.03
13_1_40cm_2_scaffold_150770 Species: Candidatus Solibacter usitatus (50%)	2	1554 bp	53.35	2.12	110.04
13_1_40cm_2_scaffold_418711 Species: R_Rokubacteria_73_56 (50%)	2	1543 bp	73.82	11.18	110.04
13_1_40cm_2_scaffold_234240 Domain: Bacteria (50%)	4	1254 bp	72.89	10.29	110.05

Displaying items 354201-354250 of 354474 in total

13_1_40cm_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40cm_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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