ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.10 Longest contig: 114.33 Kbp Bin length: 743.12 Mbp GC content: 62.33 %

Contigs count: 354474 Features count: 988742 rRNAs count: 48 tRNAs count: 6335

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 354301-354350 of 354474 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_2_scaffold_329818 Species: RHI_RIF_OP11_01_41_13b (50%)	2	1052 bp	55.80	2.00	110.65
13_1_40cm_2_scaffold_181029	3	1423 bp	65.71	1.90	110.68
13_1_40cm_2_scaffold_418476 Domain: Bacteria (66.67%)	3	1488 bp	69.42	2.22	110.68
13_1_40cm_2_scaffold_324271 Species: RBG_16_Chloroflexi_68_14_curated (50%)	2	1062 bp	60.36	2.82	110.73
13_1_40cm_2_scaffold_315776 Species: GWC2_Gemmatimonadetes_71_10_curated (50%)	2	1078 bp	73.28	5.15	110.76
13_1_40cm_2_scaffold_473123 Species: Streptosporangium roseum (50%)	2	1124 bp	68.59	2.27	110.77
13_1_40cm_2_scaffold_465456 Species: Pyrinomonas methylaliphatogenes (50%)	2	1327 bp	53.20	1.81	110.78
13_1_40cm_2_scaffold_358038 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1725 bp	55.19	5.13	110.78
13_1_40cm_2_scaffold_212554	7	1316 bp	66.19	5.93	110.79
13_1_40cm_2_scaffold_342043	7	1467 bp	65.58	12.58	110.84
13_1_40cm_2_scaffold_353030 Species: Candidatus Koribacter versatilis (66.67%)	3	1529 bp	59.65	9.22	110.86
13_1_40cm_2_scaffold_187251	3	1400 bp	65.21	6.00	110.86
13_1_40cm_2_scaffold_206643	3	1978 bp	56.88	1.97	110.87
13_1_40cm_2_scaffold_376929	2	1176 bp	49.66	3.44	110.97
13_1_40cm_2_scaffold_108598	5	1830 bp	54.81	3.44	110.98
13_1_40cm_2_scaffold_591726 Species: R_Acidobacteria_61_28 (50%)	2	1027 bp	61.05	10.08	111.00
13_1_40cm_2_scaffold_351780 Species: Microbacterium testaceum (50%)	2	1005 bp	62.49	3.58	111.04
13_1_40cm_2_scaffold_344618 Species: R_Rokubacteria_73_56 (66.67%)	3	1629 bp	67.22	13.54	111.05
13_1_40cm_2_scaffold_331630 Species: Ktedonobacter racemifer (50%)	2	1048 bp	70.52	5.73	111.07
13_1_40cm_2_scaffold_256557	3	1196 bp	66.47	2.01	111.12
13_1_40cm_2_scaffold_253418 Species: Azoarcus sp. BH72 (50%)	2	1204 bp	58.72	2.12	111.13
13_1_40cm_2_scaffold_243910	3	1228 bp	71.34	2.44	111.16
13_1_40cm_2_scaffold_209483 Domain: Bacteria (50%)	4	1325 bp	60.15	2.72	111.17
13_1_40cm_2_scaffold_317956 Species: Planctopirus limnophila (50%)	2	1074 bp	58.75	1.54	111.17
13_1_40cm_2_scaffold_284557 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	1136 bp	54.67	2.11	111.18
13_1_40cm_2_scaffold_226127 Species: R_Rokubacteria_73_56 (50%)	2	1276 bp	70.53	2.59	111.21
13_1_40cm_2_scaffold_241327 Domain: Bacteria (66.67%)	3	1235 bp	63.81	1.70	111.26
13_1_40cm_2_scaffold_295079 Class: Actinobacteria (66.67%)	3	1116 bp	65.77	2.15	111.29
13_1_40cm_2_scaffold_244780 Domain: Bacteria (66.67%)	3	1226 bp	59.95	2.32	111.34
13_1_40cm_2_scaffold_219269 Species: Catenulispora acidiphila (50%)	2	1296 bp	67.59	2.89	111.34
13_1_40cm_2_scaffold_352837 Species: Candidatus Nitrospira defluvii (50%)	2	1002 bp	59.78	4.94	111.38
13_1_40cm_2_scaffold_145631 Species: Candidatus Koribacter versatilis (50%)	2	1581 bp	54.90	1.33	111.39
13_1_40cm_2_scaffold_333438 Species: Desulfomonile tiedjei (50%)	2	1045 bp	66.03	2.30	111.39
13_1_40cm_2_scaffold_595955 Species: R_Nitrospirae_62_14 (50%)	4	1244 bp	59.73	16.76	111.41
13_1_40cm_2_scaffold_302976 Species: Pedosphaera parvula (50%)	2	1101 bp	54.68	1.36	111.44
13_1_40cm_2_scaffold_313290 Species: Granulicella mallensis (50%)	2	1082 bp	55.82	1.66	111.46
13_1_40cm_2_scaffold_309233	3	1090 bp	65.14	3.17	111.47
13_1_40cm_2_scaffold_161361 Species: GWA2_Rokubacteria_73_35_curated (50%)	2	1504 bp	69.81	10.17	111.50
13_1_40cm_2_scaffold_342753 Species: uncultured Acidobacteria bacterium (50%)	2	1025 bp	69.95	2.49	111.51
13_1_40cm_2_scaffold_328501	2	1054 bp	71.44	6.12	111.58
13_1_40cm_2_scaffold_198077 Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (50%)	2	1363 bp	63.46	5.83	111.59
13_1_40cm_2_scaffold_229663 Species: Burkholderia sp. lig30 (50%)	2	1266 bp	65.01	1.66	111.61
13_1_40cm_2_scaffold_224909 Species: Ktedonobacter racemifer (66.67%)	3	1279 bp	54.89	2.11	111.65
13_1_40cm_2_scaffold_273638 Species: R_Acidobacteria_68_18 (50%)	2	1158 bp	65.11	1.68	111.66
13_1_40cm_2_scaffold_204913 Species: Candidatus Solibacter usitatus (50%)	2	1340 bp	67.76	2.24	111.72
13_1_40cm_2_scaffold_245519 Species: GWC2_Nitrospirae_42_7_curated (50%)	2	1224 bp	62.17	4.41	111.77
13_1_40cm_2_scaffold_276265 Species: RBG_16_RIF_WS3X_71_46_curated (100%)	2	1153 bp	68.08	2.34	111.88
13_1_40cm_2_scaffold_268559 Species: RLO_RIF_CHLX_71_12 (66.67%)	3	1169 bp	70.66	4.23	111.89
13_1_40cm_2_scaffold_289764 Species: RBG_13_Deltaproteobacteria_61_14_curated (50%)	2	1126 bp	67.58	1.73	111.90
13_1_40cm_2_scaffold_299622	3	1107 bp	66.94	2.44	111.92

Displaying items 354301-354350 of 354474 in total

13_1_40cm_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40cm_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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