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13_1_40cm_2_scaffold_9624_1

Organism: 13_1_40CM_2_Rokubacteria_70_45

partial RP 39 / 55 MC: 1 BSCG 39 / 51 ASCG 11 / 38
Location: comp(33..1526)

Top 3 Functional Annotations

Value Algorithm Source
rpoD; RNA polymerase sigma factor rpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 81.0
  • Coverage: 499.0
  • Bit_score: 753
  • Evalue 1.80e-214
RNA polymerase sigma factor id=3388592 bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good similarity UNIREF
DB: UNIREF100
  • Identity: 69.2
  • Coverage: 517.0
  • Bit_score: 644
  • Evalue 6.40e-182
rpoD; RNA polymerase sigma factor rpoD similarity KEGG
DB: KEGG
  • Identity: 44.7
  • Coverage: 523.0
  • Bit_score: 402
  • Evalue 1.60e-109

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Taxonomy

R_Rokubacteria_73_56 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 1494
ATGACATTCAGGGAAGGTACTCGCGAAGTCGATGCCGGGGCCACGGCTGCCGCTCCGGGCGCGGTCACCAGCCCCGAAGAGCCCGAGACGCCCGTCGCCCTCGGAGAGGAACCCGAGGACACCCCGCGACCCGAGCCCCTGGAGGCCGGCGCGGCTCCGCGTGGTGAGGATCCGGTCCGCCTCTATCTCAAGGAGATCGGCAAGGTCCACCTGCTGACCGCCGCCCAAGAGGTCCAAATCGGTCGTCGAATCGAGGTGGGCCAGATCGCGCTCCGCCGCACGCTGGCCGGCATCCCGATGGCCGTCGAGACGCTCCTCGAGGTGAGCGATCGGCTTCGCCGGGGCGAGATTCCCCCCGACGACGTCATCGTCCTGGCGGAGGGAGGCGAGCTGGACGCGAAGCAGCTGCGGCCGGTGCTGCTGGCCTTCGGGCGACTCCGGAGGCTCCAGCGGAAGATCGCGGAGCTCCAGGATTCGTTCGGCGACAAGCGCCGGTCGAAGGCGAGCCGGACCATCCGAGCGAAGGCGATCGCGGCGGCCCACGAGGCAATCCAGAAGGTCGTGGCCGACCTGCCGCTCAAGCCGGCGCTCGTCGATGACGTCGTGGCCCAGGTCCGCGGGCGCTGGGAGCGCATCAGCCAGCTCGCTGAGGAGGCGCGCCGGAACCAGCCTACCGCCGGCCGCGAGCTCCGGGAGCTCGAGCGGGCCGTCGGCCTGCCGCGCCGGCAGCTGGGCCAGCTCCTCGAGCAGATCGAGCAGAGCGACCGCACGGTGCGTCAGGCCAAGCGAGAGCTGATGGAGGCCAATCTCCGACTGGTCGTCTCCGTGGCCAAGCGCTACCTGGGCAGCGACCTGTCGCTGCTCGACCTCGTCCAGGAGGGCAACATCGGGCTCATGAAGGCCGTCGACCGGTTCCAGTACCGTCGCGGCTTCAAGTTCTCGACGTACGCGACGTGGTGGATCCGCCAGGCCATCACGCGAGCGATCGCCGACCACTCGCGCACGATCCGGATCCCCGTCCACATGGTCGAGACGCTCAACCGGATCTCCCGGGTGAACCGCGGCCTCGTCAACGAGATGGGGCGCGAGCCCACGCCGGAAGAGCTCGCTCAGCGGACCGGCGTGCCGGCGAAGAAGGTGCGGCTCATTCTGGAGTCGTCGCGGAAGCCCCTGTCGCTCGAGACACCGATCGGCGAGGACTCCGAGCTCGGTGACTTCCTCGAGGACAAGTCCGCCGGCTCGCCGAACGAGTCGCTCCTCAACCAGGACCTGACGACGCAGGTTGAGCGGGCGCTCTCTACGCTCTCGCCCAAGGAGAAGGAGATCCTGCGCCTGCGGTTCGGCATCGGCGAGGAGGGCGAGCACACCCTCGAGGAGGTCGGCAGGCGCTTCGCGGTCACGCGTGAGCGCATCCGACAGATCGAGGCCAAGGCGCTCCGAAAGCTGCGGCACCCGCTGCGCGGCCGCAACCTTCGCGCCTTCGTCGAGAACTAG
PROTEIN sequence
Length: 498
MTFREGTREVDAGATAAAPGAVTSPEEPETPVALGEEPEDTPRPEPLEAGAAPRGEDPVRLYLKEIGKVHLLTAAQEVQIGRRIEVGQIALRRTLAGIPMAVETLLEVSDRLRRGEIPPDDVIVLAEGGELDAKQLRPVLLAFGRLRRLQRKIAELQDSFGDKRRSKASRTIRAKAIAAAHEAIQKVVADLPLKPALVDDVVAQVRGRWERISQLAEEARRNQPTAGRELRELERAVGLPRRQLGQLLEQIEQSDRTVRQAKRELMEANLRLVVSVAKRYLGSDLSLLDLVQEGNIGLMKAVDRFQYRRGFKFSTYATWWIRQAITRAIADHSRTIRIPVHMVETLNRISRVNRGLVNEMGREPTPEELAQRTGVPAKKVRLILESSRKPLSLETPIGEDSELGDFLEDKSAGSPNESLLNQDLTTQVERALSTLSPKEKEILRLRFGIGEEGEHTLEEVGRRFAVTRERIRQIEAKALRKLRHPLRGRNLRAFVEN*