ggKbase home page

ACD20_48_25 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
DNA-directed RNA polymerase, gamma subunit n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNB2_9SYNE (db=UNIREF evalue=0.0 bit_score=802.0 identity=65.75 coverage=97.9020979020979) similarity UNIREF
DB: UNIREF
65.75 97.9 802 0.0 syne:Syn6312_1245
DNA-directed RNA polymerase subunit gamma (EC:2.7.7.6) similarity KEGG
DB: KEGG
69.2 572.0 789 6.80e-226 syne:Syn6312_1245
DNA-directed RNA polymerase subunit gamma (EC:2.7.7.6) rbh KEGG
DB: KEGG
69.2 572.0 789 6.80e-226 syne:Syn6312_1245
seg (db=Seg db_id=seg from=115 to=126) iprscan interpro
DB: Seg
null null null null syne:Syn6312_1245
coiled-coil (db=Coil db_id=coil from=387 to=408 evalue=NA) iprscan interpro
DB: Coil
null null null null syne:Syn6312_1245
DNA-DIRECTED RNA POLYMERASE BETA CHAIN (db=HMMPanther db_id=PTHR19376:SF4 from=5 to=541 evalue=0.0) iprscan interpro
DB: HMMPanther
null null null 0.0 syne:Syn6312_1245
DNA-DIRECTED RNA POLYMERASE (db=HMMPanther db_id=PTHR19376 from=5 to=541 evalue=0.0) iprscan interpro
DB: HMMPanther
null null null 0.0 syne:Syn6312_1245
beta and beta-prime subunits of DNA dependent RNA-polymerase (db=superfamily db_id=SSF64484 from=5 to=569 evalue=4.9e-230) iprscan interpro
DB: superfamily
null null null 4.90e-230 syne:Syn6312_1245
no description (db=HMMSmart db_id=SM00663 from=228 to=507 evalue=4.0e-181 interpro_id=IPR006592 interpro_description=RNA polymerase, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) iprscan interpro
DB: HMMSmart
null null null 4.00e-181 syne:Syn6312_1245
no description (db=Gene3D db_id=G3DSA:3.90.1120.10 from=4 to=338 evalue=1.1e-121 interpro_id=IPR007080 interpro_description=RNA polymerase Rpb1, domain 1 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) iprscan interpro
DB: Gene3D
null null null 1.10e-121 syne:Syn6312_1245
RNA_pol_Rpb1_1 (db=HMMPfam db_id=PF04997 from=8 to=335 evalue=9.9e-91 interpro_id=IPR007080 interpro_description=RNA polymerase Rpb1, domain 1 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) iprscan interpro
DB: HMMPfam
null null null 9.90e-91 syne:Syn6312_1245
RNA_pol_Rpb1_2 (db=HMMPfam db_id=PF00623 from=337 to=478 evalue=2.1e-52 interpro_id=IPR000722 interpro_description=RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) iprscan interpro
DB: HMMPfam
null null null 2.10e-52 syne:Syn6312_1245
no description (db=Gene3D db_id=G3DSA:2.40.40.30 from=339 to=481 evalue=7.0e-31 interpro_id=IPR000722 interpro_description=RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) iprscan interpro
DB: Gene3D
null null null 7.00e-31 syne:Syn6312_1245
RNA_pol_Rpb1_3 (db=HMMPfam db_id=PF04983 from=482 to=564 evalue=2.5e-15 interpro_id=IPR007066 interpro_description=RNA polymerase Rpb1, domain 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) iprscan interpro
DB: HMMPfam
null null null 2.50e-15 syne:Syn6312_1245
RNApol_bact_RpoC1 (db=HAMAP db_id=MF_01323 from=4 to=569 evalue=33.258) iprscan interpro
DB: HAMAP
null null null 3.33e+01 syne:Syn6312_1245
tel:tll0641 rpoC1; DNA-directed RNA polymerase subunit gamma (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] alias=ACD20_26279.54254.14G0025,ACD20_26279.54254.14_25,ACD20_C00048G00025 id=19103 tax=ACD20 species=Synechococcus sp. PCC 7335 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm similarity UNIREF
DB: UNIREF90
100.0 null 1132 0.0 syne:Syn6312_1245
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" UNIPROT
DB: UniProtKB
99.8 571.0 1132 0.0 K2E0X9_9BACT