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ACD20_82_11

Organism: ACD20

near complete RP 51 / 55 MC: 13 BSCG 50 / 51 MC: 4 ASCG 0 / 38
Location: comp(16635..17225)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VHL4_9CYAN (db=UNIREF evalue=1.0e-40 bit_score=169.0 identity=49.44 coverage=88.8324873096447) similarity UNIREF
DB: UNIREF
  • Identity: 49.44
  • Coverage: 88.83
  • Bit_score: 169
  • Evalue 1.00e-40
RNA polymerase sigma factor RpoE similarity KEGG
DB: KEGG
  • Identity: 46.9
  • Coverage: 192.0
  • Bit_score: 163
  • Evalue 4.80e-38
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=16 to=187 evalue=4.2e-43 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 4.20e-43

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Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 591
ATGGAGATGCTCGAGCTGGTTGAAAAAAGCCAGCAGGAGGATCGTTTTGCTCTTGAAGAACTTGTTCGAAGAAATGAAAGAATAGTTTATAGTACTCTTTATCACCTTGACCCCAACAGAACTGATATTCCTGATCTTGCTCAGGAAGTATTATTTCGAATGGCAAGAGCAATAAAAAATCTGAGAAACCCGGGTACTTTTAAATTCTGGTTAAATCAAATTATTACAAATCTTTTTTATGATGAATTGCGCAGAAAGACCAGAAGGCTTGCTACCATTTCAATGGACACTCCTTATCTTACCCCGGGAGAGGAAGAATCATCACCTACAAGAGATATCATCGACTTAGCTAAGATGCCAGAGGAAACTACGCTGGGGGGAGAACTCGATACAAAAATTAAAGAAGCAATTGAAAATTTACCGGAACAGTTTCGACTGGTTATCGTCTTAAGAGAACTACAAGGGCTTAGTTATGAAGAAATAGCGGAGATTACAGGAACTAATATAGGAACGGTAAAATCCAGACTTGCAAGAGCCAGAGCCAAATTACAAGAACATATAAAACCCTATCTTGAAGAAAGAGGCGCATAA
PROTEIN sequence
Length: 197
MEMLELVEKSQQEDRFALEELVRRNERIVYSTLYHLDPNRTDIPDLAQEVLFRMARAIKNLRNPGTFKFWLNQIITNLFYDELRRKTRRLATISMDTPYLTPGEEESSPTRDIIDLAKMPEETTLGGELDTKIKEAIENLPEQFRLVIVLRELQGLSYEEIAEITGTNIGTVKSRLARARAKLQEHIKPYLEERGA*