ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

rifcsphigho2_01_scaffold_4731_26

Organism: RIFCSPHIGHO2_01_FULL_Archaea_Woesearchaeota_47_16

near complete RP 34 / 55 MC: 5 BSCG 3 / 51 ASCG 34 / 38 MC: 1
Location: comp(19829..20350)

Top 3 Functional Annotations

Value Algorithm Source
helix-turn-helix domain-containing protein; K03627 putative transcription factor Tax=CG_Woesearch_02 similarity UNIPROT
DB: UniProtKB
  • Identity: 46.4
  • Coverage: 153.0
  • Bit_score: 143
  • Evalue 2.30e-31
Putative transcription factor, MBF1 like protein id=5800236 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized similarity UNIREF
DB: UNIREF100
  • Identity: 45.6
  • Coverage: 149.0
  • Bit_score: 138
  • Evalue 6.80e-30
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 46.7
  • Coverage: 150.0
  • Bit_score: 127
  • Evalue 3.40e-27

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

CG_Woesearch_02 → Woesearchaeota → Archaea

Sequences

DNA sequence
Length: 522
ATGACTTCAAGGATACTTGGGGTCTTCAGGAGCACAAAATATAAAAACGCGTGCCTTACGGATCAATCCATGCAGTGCGAGATGTGTGGGGAAGACAAGGAATTATTCATTGCCGATATTGAGGGCTCGAAGCTGAAGGTATGCAAGAAATGCGGGAGATATGGGAAGATCCTGTCAAAAGTGGTTGAGATACAAGAGATTCCCCAGAAGGCTGTCCGGAAGGAGCCGAGCGTGGAAGTGCTTGAATACGTAAATGAGGAGTATCCTAAGATAATCAAACAGGCCAGGGAAAAGAGGGGATTGACGCAGGAGGACTTTGCCAAGATGTTGAATGAGCGTGAGTCCATGATTCAGCATCTTGAGACGGGGAAGTTCGAGCCCCCCATCCTTCTCGCCAAGAAGTTGGAGCGCGCACTGAACATTAAGCTTGTTGAGGAGATGCAAGAAGTGCACGAGTCTTCTGTAAAGGACGATACTGAGTCGCTGACGATTGGTGACGTTATTAAGATTAAGAAAAAATAG
PROTEIN sequence
Length: 174
MTSRILGVFRSTKYKNACLTDQSMQCEMCGEDKELFIADIEGSKLKVCKKCGRYGKILSKVVEIQEIPQKAVRKEPSVEVLEYVNEEYPKIIKQAREKRGLTQEDFAKMLNERESMIQHLETGKFEPPILLAKKLERALNIKLVEEMQEVHESSVKDDTESLTIGDVIKIKKK*