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ACD21_17

Alias: ACD21_21909.61253.11

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Displaying items 31-60 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD21_17_31

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27143..27763
DNA (621bp) protein (207aa)
hypothetical protein (db=KEGG evalue=2.0e-12 bit_score=75.5 identity=29.75 coverage=70.048309178744)
Putative uncharacterized protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A0X0_PELCD (db=UNIREF evalue=2.0e-12 bit_score=75.5 identity=29.75 coverage=70.048309178744)
seg (db=Seg db_id=seg from=10 to=24)
DUF330 (db=HMMPfam db_id=PF03886 from=34 to=190 evalue=1.9e-06 interpro_id=IPR005586 interpro_description=Protein of unknown function DUF330)
ACD21_17_32

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27797..28948
DNA (1152bp) protein (384aa)
S-adenosylmethionine synthase n=1 Tax=Methylococcus capsulatus RepID=METK_METCA (db=UNIREF evalue=3.0e-160 bit_score=568.0 identity=70.68 coverage=98.9583333333333)
metK-1; S-adenosylmethionine synthetase (EC:2.5.1.6)
metK-1; S-adenosylmethionine synthetase (EC:2.5.1.6)
ADOMET_SYNTHASE_2 (db=PatternScan db_id=PS00377 from=258 to=266 evalue=0.0 interpro_id=IPR022631 interpro_description=S-adenosylmethionine synthetase, conserved site)
ACD21_17_33

Not on your lists

28993..29502
DNA (510bp) protein (170aa)
aroK; Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=8 Tax=Legionella RepID=AROK_LEGPA (db=UNIREF evalue=3.0e-41 bit_score=170.0 identity=56.13 coverage=90.0)
SKI (db=HMMPfam db_id=PF01202 from=1 to=157 evalue=1.0e-40 interpro_id=IPR000623 interpro_description=Shikimate kinase GO=Molecular Function: shikimate kinase activity (GO:0004765), Molecular Function: ATP binding (GO:0005524))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=168 evalue=9.9e-36)
ACD21_17_34

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comp(29488..30408)
DNA (921bp) protein (307aa)
Adenine specific methylase n=5 Tax=Legionella pneumophila RepID=D5T7H6_LEGPN (db=UNIREF evalue=2.0e-94 bit_score=349.0 identity=55.71 coverage=93.8110749185668)
Uncharacterized adenine-specific methylase VC_2118 (EC:2.1.1.72)
Uncharacterized adenine-specific methylase VC_2118 (EC:2.1.1.72)
seg (db=Seg db_id=seg from=4 to=15)
ACD21_17_35

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comp(30424..31773)
DNA (1350bp) protein (450aa)
Metallo-beta lactamase family protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N5E4_9GAMM (db=UNIREF evalue=4.0e-150 bit_score=535.0 identity=58.76 coverage=99.5555555555556)
ysh1; beta-lactamase domain-containing protein
ysh1; beta-lactamase domain-containing protein
seg (db=Seg db_id=seg from=248 to=257)
ACD21_17_36

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comp(31978..32214)
DNA (237bp) protein (79aa)
31978..32214 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE01531.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD21_17_37

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comp(32225..34222)
DNA (1998bp) protein (666aa)
DNA ligase n=1 Tax=Nitrosococcus halophilus Nc4 RepID=D5C143_NITHN (db=UNIREF evalue=0.0 bit_score=847.0 identity=61.06 coverage=98.6486486486486)
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase, NAD-dependent (EC:6.5.1.2)
seg (db=Seg db_id=seg from=409 to=421)
ACD21_17_38

Not on your lists

comp(34231..34884)
DNA (654bp) protein (218aa)
zipA; cell division protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
ZipA_C (db=HMMPfam db_id=PF04354 from=71 to=199 evalue=3.5e-37 interpro_id=IPR007449 interpro_description=ZipA, C-terminal FtsZ-binding domain GO=Biological Process: barrier septum formation (GO:0000917), Molecular Function: protein binding (GO:0005515), Cellular Component: Gram-negative-bacterium-type cell wall (GO:0009276), Cellular Component: integral to membrane (GO:0016021))
Cell-division protein ZipA, C-terminal domain (db=superfamily db_id=SSF64383 from=68 to=207 evalue=3.5e-32 interpro_id=IPR007449 interpro_description=ZipA, C-terminal FtsZ-binding domain GO=Biological Process: barrier septum formation (GO:0000917), Molecular Function: protein binding (GO:0005515), Cellular Component: Gram-negative-bacterium-type cell wall (GO:0009276), Cellular Component: integral to membrane (GO:0016021))
ACD21_17_39

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comp(34899..38417)
DNA (3519bp) protein (1173aa)
smc; chromosome segregation protein SMC
smc; chromosome segregation protein SMC
Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YC57_9GAMM (db=UNIREF evalue=0.0 bit_score=981.0 identity=47.06 coverage=99.3179880647911)
coiled-coil (db=Coil db_id=coil from=480 to=501 evalue=NA)
ACD21_17_40

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38694..39260
DNA (567bp) protein (189aa)
septum formation inhibitor Maf
ITPase-like (db=superfamily db_id=SSF52972 from=1 to=187 evalue=2.6e-46)
Maf (db=HMMPfam db_id=PF02545 from=1 to=185 evalue=3.4e-42 interpro_id=IPR003697 interpro_description=Maf-like protein GO=Cellular Component: cytoplasm (GO:0005737))
no description (db=Gene3D db_id=G3DSA:3.90.950.10 from=2 to=188 evalue=7.2e-40)
ACD21_17_41

Not on your lists

39426..39893
DNA (468bp) protein (156aa)
hypothetical protein
no description (db=Gene3D db_id=G3DSA:1.20.1260.10 from=5 to=148 evalue=1.0e-18 interpro_id=IPR012347 interpro_description=Ferritin-related)
Rubrerythrin (db=HMMPfam db_id=PF02915 from=9 to=149 evalue=1.5e-14 interpro_id=IPR003251 interpro_description=Rubrerythrin GO=Molecular Function: metal ion binding (GO:0046872))
Ferritin-like (db=superfamily db_id=SSF47240 from=9 to=155 evalue=3.1e-12 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation reduction (GO:0055114))
ACD21_17_42

Not on your lists

39919..40362
DNA (444bp) protein (148aa)
seg (db=Seg db_id=seg from=11 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Pili subunits (db=superfamily db_id=SSF54523 from=9 to=115 evalue=1.2e-12)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=6 to=29 evalue=0.0093 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD21_17_43

Not on your lists

40359..40742
DNA (384bp) protein (128aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
Pili subunits (db=superfamily db_id=SSF54523 from=7 to=113 evalue=5.0e-10)
BCTERIALGSPH (db=FPrintScan db_id=PR00885 from=17 to=31 evalue=1.4e-05 interpro_id=IPR002416 interpro_description=Bacterial general secretion pathway protein H GO=Molecular Function: protein transporter activity (GO:0008565), Cellular Component: type II protein secretion system complex (GO:0015627), Biological Process: protein secretion by the type II secretion system (GO:0015628))
BCTERIALGSPH (db=FPrintScan db_id=PR00885 from=2 to=16 evalue=1.4e-05 interpro_id=IPR002416 interpro_description=Bacterial general secretion pathway protein H GO=Molecular Function: protein transporter activity (GO:0008565), Cellular Component: type II protein secretion system complex (GO:0015627), Biological Process: protein secretion by the type II secretion system (GO:0015628))
ACD21_17_44

Not on your lists

40752..41237
DNA (486bp) protein (162aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=13 to=27)
seg (db=Seg db_id=seg from=67 to=83)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=8 to=31 evalue=1.0e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD21_17_45

Not on your lists

comp(41344..42285)
DNA (942bp) protein (314aa)
serine/threonine protein kinase
seg (db=Seg db_id=seg from=140 to=160)
RNI-like (db=superfamily db_id=SSF52047 from=79 to=293 evalue=4.8e-34)
no description (db=Gene3D db_id=G3DSA:3.80.10.10 from=85 to=288 evalue=1.3e-22)
ACD21_17_46
RBG_16_Gammaproteobacteria_37_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42413..43354)
DNA (942bp) protein (314aa)
conjugal transfer protein traB
seg (db=Seg db_id=seg from=101 to=119)
T2SP_E (db=PatternScan db_id=PS00662 from=222 to=236 evalue=0.0 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
TrbB_P: P-type conjugative transfer ATPase T (db=HMMTigr db_id=TIGR02782 from=9 to=313 evalue=6.1e-122 interpro_id=IPR014149 interpro_description=ATPase, P-type conjugative transfer, TrbB GO=Biological Process: conjugation (GO:0000746), Cellular Component: cytoplasm (GO:0005737))
ACD21_17_47

Not on your lists

comp(43483..44028)
DNA (546bp) protein (182aa)
conjugal transfer protein precursor
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=32)
Peptidase_S26 (db=HMMPfam db_id=PF10502 from=40 to=175 evalue=1.5e-33 interpro_id=IPR019533 interpro_description=Peptidase S26, conserved region)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=41 to=175 evalue=1.1e-23 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
ACD21_17_48

Not on your lists

comp(44155..44331)
DNA (177bp) protein (59aa)
seg (db=Seg db_id=seg from=9 to=20)
Uncharacterized protein {ECO:0000313|EMBL:EKE01522.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD21_17_49
RBG_16_Gammaproteobacteria_37_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(44298..45602)
DNA (1305bp) protein (435aa)
P-type conjugative transfer protein TrbL
P-type conjugative transfer protein TrbL n=1 Tax=Geobacter sp. M21 RepID=C6DZ86_GEOSM (db=UNIREF evalue=3.0e-07 bit_score=60.5 identity=29.72 coverage=45.5172413793103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=159 to=179)
transmembrane_regions (db=TMHMM db_id=tmhmm from=192 to=214)
ACD21_17_50

Not on your lists

comp(45612..46898)
DNA (1287bp) protein (429aa)
conjugation TrbI-like protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=25 to=39)
seg (db=Seg db_id=seg from=158 to=169)
ACD21_17_51

Not on your lists

comp(46913..47854)
DNA (942bp) protein (314aa)
conjugal transfer protein trbG
seg (db=Seg db_id=seg from=57 to=64)
seg (db=Seg db_id=seg from=71 to=82)
TrbG_Ti: P-type conjugative transfer protein (db=HMMTigr db_id=TIGR02775 from=92 to=300 evalue=1.6e-58 interpro_id=IPR014142 interpro_description=P-type conjugative transfer protein TrbG)
ACD21_17_52

Not on your lists

comp(47909..48592)
DNA (684bp) protein (228aa)
conjugal transfer protein TrbF
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
seg (db=Seg db_id=seg from=44 to=64)
VirB8 (db=HMMPfam db_id=PF04335 from=24 to=225 evalue=3.1e-49 interpro_id=IPR007430 interpro_description=VirB8 GO=Cellular Component: membrane (GO:0016020))
ACD21_17_53

Not on your lists

comp(48768..51176)
DNA (2409bp) protein (803aa)
Conjugal transfer protein; TrbE n=2 Tax=Mesorhizobium loti RepID=Q989J2_RHILO (db=UNIREF evalue=0.0 bit_score=912.0 identity=55.5 coverage=99.7509339975093)
Conjugal transfer protein
Conjugal transfer protein
seg (db=Seg db_id=seg from=57 to=68)
ACD21_17_54

Not on your lists

comp(51237..51491)
DNA (255bp) protein (85aa)
type IV secretory pathway VirB3 family protein
Type IV secretory pathway VirB3 family protein n=1 Tax=Geobacter sp. M21 RepID=C6DZ89_GEOSM (db=UNIREF evalue=6.0e-11 bit_score=69.7 identity=44.05 coverage=97.6470588235294)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
seg (db=Seg db_id=seg from=51 to=64)
ACD21_17_55

Not on your lists

comp(51492..51815)
DNA (324bp) protein (108aa)
conjugal transfer protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
seg (db=Seg db_id=seg from=92 to=107)
ACD21_17_56

Not on your lists

comp(51919..52923)
DNA (1005bp) protein (335aa)
GTPase CgtA
GTPase CgtA
GTPase obg n=5 Tax=Pseudomonas RepID=OBG_PSEP1 (db=UNIREF evalue=1.0e-106 bit_score=389.0 identity=66.87 coverage=97.910447761194)
seg (db=Seg db_id=seg from=32 to=43)
ACD21_17_57

Not on your lists

53063..53302
DNA (240bp) protein (80aa)
30S ribosomal protein S21
30S ribosomal protein S21 n=1 Tax=Hahella chejuensis KCTC 2396 RepID=RS21_HAHCH (db=UNIREF evalue=3.0e-10 bit_score=67.4 identity=73.81 coverage=51.25)
seg (db=Seg db_id=seg from=69 to=79)
seg (db=Seg db_id=seg from=43 to=59)
ACD21_17_58

Not on your lists

53317..53766
DNA (450bp) protein (150aa)
GatB/Yqey n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GYU6_METFK (db=UNIREF evalue=2.0e-42 bit_score=174.0 identity=60.0 coverage=96.0)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=55 to=87 evalue=NA)
YqeY (db=HMMPfam db_id=PF09424 from=7 to=148 evalue=1.4e-51 interpro_id=IPR019004 interpro_description=Protein of unknown function YOR215C, mitochondrial)
ACD21_17_59

Not on your lists

54406..55605
DNA (1200bp) protein (400aa)
DNA primase n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N576_9GAMM (db=UNIREF evalue=4.0e-89 bit_score=332.0 identity=44.27 coverage=94.75)
DNA primase
DNA primase
seg (db=Seg db_id=seg from=283 to=294)
ACD21_17_60

Not on your lists

55611..57830
DNA (2220bp) protein (740aa)
RNA polymerase sigma-70 subunit RpoD
RNA polymerase sigma-70 subunit RpoD
RNA polymerase sigma factor rpoD n=5 Tax=Coxiella burnetii RepID=RPOD_COXBU (db=UNIREF evalue=4.0e-158 bit_score=562.0 identity=69.15 coverage=54.1891891891892)
seg (db=Seg db_id=seg from=265 to=316)
Displaying items 31-60 of 63 in total

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