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bjp_ig2157_scaffold_340_14

Organism: BJP_Ig2157_Hor_140_2014_Burkholderiales_65_17

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38 MC: 4
Location: 15331..15564

Top 3 Functional Annotations

Value Algorithm Source
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 id=5082363 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 78.0
  • Bit_score: 159
  • Evalue 1.70e-36
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenoph similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 77.0
  • Bit_score: 159
  • Evalue 2.30e-36
rpmB; 50S ribosomal protein L28 similarity KEGG
DB: KEGG
  • Identity: 96.1
  • Coverage: 77.0
  • Bit_score: 155
  • Evalue 6.70e-36

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Taxonomy

Hydrogenophaga sp. T4 → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 234
ATGGCACGCGTCTGCGACGTCACGGGCAAAAAGCCCATGGTCGGGAACAATGTTTCCCACGCCAACAACAAAACCAAGCGCCGGTTCCTGCCGAACCTGCAATACCGCCGTTTCTGGGTCGAAAGCGAAAACCGCTGGATTCGCCTGCGCGTGTCGGGTGCAGCCCTGCGCCTGATCGACAAAAACGGCATCGATGCCGTGCTCGCAGACCTGCGCGCACGCGGCCAAGCTTAA
PROTEIN sequence
Length: 78
MARVCDVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWIRLRVSGAALRLIDKNGIDAVLADLRARGQA*