ggKbase home page

13_1_40cm_4_scaffold_4207_6

Organism: 13_1_40CM_4_Rokubacteria_69_5

near complete RP 45 / 55 MC: 3 BSCG 41 / 51 ASCG 13 / 38
Location: comp(2328..2840)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 57.8
  • Coverage: 166.0
  • Bit_score: 174
  • Evalue 2.40e-41
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.8
  • Coverage: 166.0
  • Bit_score: 174
  • Evalue 1.20e-40
RNA polymerase sigma factor id=3395044 bin=GWF2_Lentisphaerae_49_21 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + similarity UNIREF
DB: UNIREF100
  • Identity: 45.4
  • Coverage: 174.0
  • Bit_score: 152
  • Evalue 4.50e-34

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Gemmatimonadetes bacterium KBS708 → Gemmatimonadetes → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 513
ATGTCGCCAGAGGACCTCGCCGCCCAGCTCGAGCAGCTACACGCCGCGGCGTTCGGCTGGGCGCTCTCGTGCTGCGGCTGGGACCGGCCGGCCGCCGAGGACGTGCTCCAGGCGAGCTACTTGAAGATCCTCGATGGGCGGGCGCGGTTCGACGGGCGCTCCGGGTTCCGCACGTGGGCGTTCGGAGTGATCCGCCGGACCGCGCAAGAGGCTCGACGCCGGGCGGCGTGGGGGCGGTGGCTCCCGCTGACCCGGCTGCTGTTCGGGCCGGAGGCGGCGGACGGCCGCCCCGATGCGGCGACGGTGCTCGCTCAGGCCGACGACTCCGCCCGCCTGGTGCGCGCGCTCGCGCGGCTGCCGGCCCGGCAGCGCGAGGTCCTGCACCTGGTGTTCTACGAGGACCTGACGATCGCCGCCGCCGCGACGCTGCTCGGCATCGCGCTCGGCACGGCGCGCACGCACTACGAGCGCGGCAAGGCGGCGCTGCGCCGCGGGCTGGAGGAGAAGGGCTGA
PROTEIN sequence
Length: 171
MSPEDLAAQLEQLHAAAFGWALSCCGWDRPAAEDVLQASYLKILDGRARFDGRSGFRTWAFGVIRRTAQEARRRAAWGRWLPLTRLLFGPEAADGRPDAATVLAQADDSARLVRALARLPARQREVLHLVFYEDLTIAAAATLLGIALGTARTHYERGKAALRRGLEEKG*