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13_1_20cm_3_scaffold_17030_15

Organism: 13_1_20CM_3_Actinobacteria_71_11

partial RP 40 / 55 MC: 3 BSCG 35 / 51 MC: 4 ASCG 12 / 38 MC: 5
Location: 10596..11060

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Micromonospora sp. CNB394 RepID=UPI0003741689 similarity UNIREF
DB: UNIREF100
  • Identity: 76.6
  • Coverage: 158.0
  • Bit_score: 216
  • Evalue 1.70e-53
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.; UNIPROT
DB: UniProtKB
  • Identity: 81.2
  • Coverage: 144.0
  • Bit_score: 216
  • Evalue 2.50e-53
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 77.7
  • Coverage: 148.0
  • Bit_score: 214
  • Evalue 2.50e-53

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Taxonomy

Micromonospora carbonacea → Micromonospora → Micromonosporales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 465
GTGGCCCAGCCGCTGCGCACGAACAGCGATGACGACCAGTTCGAGGCCGTGGACCTGACCGACGAGCCGGTCGACCTGGATGCCGATGAGCGCGGGGTGTCCGCCGACCTGGTCCGCGCCTACCTCAACGGCATCGGCCGCACCAAGCTGCTCACCGCCGAGCAGGAGGTGCAGCTCGCCAAGCGGATCGAGGCCGGCCTGTACGCCGAGGAACTCCTCGACGAGGTACGCGACCCGGAGCTGGCCGCCGACCTACGGACGGTCGTCCGCGAGGGGCGGGCCGCGAAGGACCACCTGCTGGAGGCGAACCTGCGGCTCGTGGTCAGCATCGCCAAGCGGTACACCGGGCGGGGCATGGCCTTCCTCGACCTCATCCAGGAGGGCAACCTCGGCCTGATCCGCGCGGTCGAGAAGTTCGACTACACCAAGGGGTACAAGTTCTCCACGTACGCCACCTGGTGGATC
PROTEIN sequence
Length: 155
VAQPLRTNSDDDQFEAVDLTDEPVDLDADERGVSADLVRAYLNGIGRTKLLTAEQEVQLAKRIEAGLYAEELLDEVRDPELAADLRTVVREGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWI