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13_1_20cm_4_scaffold_1043_12

Organism: 13_1_20CM_4_Verrucomicrobia_54_11

near complete RP 42 / 55 MC: 3 BSCG 44 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(13262..13795)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VEB2_CAUST similarity UNIREF
DB: UNIREF100
  • Identity: 33.0
  • Coverage: 176.0
  • Bit_score: 97
  • Evalue 1.40e-17
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated UNIPROT
DB: UniProtKB
  • Identity: 46.6
  • Coverage: 178.0
  • Bit_score: 146
  • Evalue 2.70e-32
RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 33.0
  • Coverage: 176.0
  • Bit_score: 97
  • Evalue 3.80e-18

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Taxonomy

RIFOXYB12_FULL_Lentisphaerae_65_16_curated → Lentisphaerae → Bacteria

Sequences

DNA sequence
Length: 534
ATGGATCCTAGTGAACGCGAAAAATATCAGGCAGCCATTCATGGCGATCGCGAGGCATTCGAAATGATTATTCGCACCCATAGCCGGACGCTTTTCGCCATTGCTTACGGCGTTTTGCAAAGCCGCGAGGAGGCAGAGGATGTCGCACAAGATTCGCTGGTCAAAGCATGGAAAACACGCTGGCGCGTGCGCGATCCGGAAAAATTTCCGGCCTGGCTCGCAACGATTGCGCGACACAAGGCGCACGACGTTTTTCGCAAACGCCGCACCGTTCCTTTGTCGGAGCAAGCGACGGAACCGATCGAGCCAGAGCCAGCGAACACGAGTGCTCTAGATCAAAAATTGCATTCCGCACTCGCAGCGTTGCCGGAACTCCATCGGGCTGCGCTCACGTTGCGCTATTTCGAAGAGATGGATTATCGCACTATCGAAAACAGCCTGGGTCTAACCAATGGCGCGCTGCGCGGCATACTCGGCCGTGCTCTGACTTCAATGCGCAAACAACTTCGTCCAGCTCTCGCTCCAATGGACTAA
PROTEIN sequence
Length: 178
MDPSEREKYQAAIHGDREAFEMIIRTHSRTLFAIAYGVLQSREEAEDVAQDSLVKAWKTRWRVRDPEKFPAWLATIARHKAHDVFRKRRTVPLSEQATEPIEPEPANTSALDQKLHSALAALPELHRAALTLRYFEEMDYRTIENSLGLTNGALRGILGRALTSMRKQLRPALAPMD*