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13_1_20cm_4_scaffold_3298_5

Organism: 13_1_20CM_4_Actinobacteria_68_12

partial RP 8 / 55 BSCG 11 / 51 ASCG 6 / 38
Location: comp(5350..5763)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase sigma factor n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0GY46_ACTM4 similarity UNIREF
DB: UNIREF100
  • Identity: 51.2
  • Coverage: 129.0
  • Bit_score: 129
  • Evalue 1.90e-27
FliA/WhiG family RNA polymerase sigma factor; K03090 RNA polymerase sigma-B factor Tax=RBG_16_Actinobacteria_64_13_curated UNIPROT
DB: UniProtKB
  • Identity: 60.4
  • Coverage: 134.0
  • Bit_score: 157
  • Evalue 1.60e-35
putative RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 51.2
  • Coverage: 129.0
  • Bit_score: 129
  • Evalue 5.40e-28

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Taxonomy

RBG_16_Actinobacteria_64_13_curated → Rubrobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 414
GTGGAGTTCGGACGGTCGCCTACGATCGCCGAGCTCGCCAAGGCCGCGGAGGTCTCCGAGGAGGAAGTGCTGGAGGCGCTCGAGAGCGGGCGCGCGTATAGCTCGCTGTCGCTCTCGGCAGGCCCCGGCCAGGACGACGACGGCGACCTCGACCCGCTCGAGTCGCTCGGCACCGAGGAGCACGAGTACGAGGTCTCCGAAGACCGGGCGATTCTCGAGCCCGGTTTCCGCGTCCTCGACGACCGTGAGCGCACGATCCTTCACCTGCGCTTCTTCAAGGGGTTGACGCAGTCTCAGATCGCCCAGCAGGTCGGGATCTCCCAGATGCACGTCTCGCGACTGATCCGCCGCTCGCTCGAGAAGATTCGCGAGGAGATCGCGGCGGACGAGGAGGCGGGCCGGCCCCTCCGCTAG
PROTEIN sequence
Length: 138
VEFGRSPTIAELAKAAEVSEEEVLEALESGRAYSSLSLSAGPGQDDDGDLDPLESLGTEEHEYEVSEDRAILEPGFRVLDDRERTILHLRFFKGLTQSQIAQQVGISQMHVSRLIRRSLEKIREEIAADEEAGRPLR*