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13_1_20cm_4_scaffold_8020_12

Organism: 13_1_20CM_4_Actinobacteria_69_9

partial RP 30 / 55 MC: 2 BSCG 35 / 51 ASCG 12 / 38 MC: 1
Location: comp(7689..8489)

Top 3 Functional Annotations

Value Algorithm Source
O-antigen export system permease protein RfbD n=1 Tax=Patulibacter medicamentivorans RepID=H0E4D6_9ACTN similarity UNIREF
DB: UNIREF100
  • Identity: 37.5
  • Coverage: 269.0
  • Bit_score: 174
  • Evalue 1.30e-40
ABC transporter inner membrane subunit; K09690 lipopolysaccharide transport system permease protein Tax=RBG_16_Actinobacteria_68_12_curated UNIPROT
DB: UniProtKB
  • Identity: 61.3
  • Coverage: 266.0
  • Bit_score: 320
  • Evalue 2.70e-84
ABC-2 type transporter similarity KEGG
DB: KEGG
  • Identity: 36.1
  • Coverage: 263.0
  • Bit_score: 158
  • Evalue 2.10e-36

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Taxonomy

RBG_16_Actinobacteria_68_12_curated → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 801
ATGACGACGGTATACGGCGATCTCGTCCGCTACCGCGAGCTGTTCGGGAATCTCTTTCGCCGGGACGTCCAGGCGAAGTACCGCGGCTCGGTGCTCGGCGTTGCCTGGACTCTCGCGAACCCCGCCCTGCTCATGGCGGTCTACCTGCTCGTCTTCTCCGTCCTGTGGAAGACGCCGTTCGGAAACGAGGGCCATTACGCCCTTTTCCTGCTCGTCGGCCTGTCGGCCTGGATCTTCTTCGCAACCTCCGTGCAGTCGGCGTCGCGCTCCCTGCTCGACAACGCGAACCTGATCCGGAAGACGCGCTTCCCCCGCCAGCTCGTGCCGCTGTCCGTCGTCGCGACGCAGCTGATCAGCTTCGGCGTGATGCTGGGGGCGCTGCTCGTCCTGAACTTCGCGCTGCTGCCACGCGTCCGCGCCACCGAGTGGCTGGCGCTGCCGATCGGCGTCGCGCTCGTCGCGATCACCGGAGGGCTCTCGCTCGCGCTCGCATCTCTGAACGTCCTCTTCCGCGACATCGAGTTCCTCGTGGCTGCACTCTTGCTGCCGCTCTTCTTTCTCACGCCCGTGCTCTATCCGCTGACGGATCAGCAGATCGCGAGCCGCCAATGGGTCGTCGACCTGATCCACTGGGCGAACCCGCTGTCACCGCCGATCGAGGCGCTGCACGCGGTGCTCTTCTACGGGAACCTCCCGAGTGCGGGCGACACGATCTACACCGTGGTCGCAGCACTCGTCGCGCTCGCACTGGGCGCCTGGGTGTTCATGGGCGTCGACGATCAGATTGCGGTAGAAGTGTGA
PROTEIN sequence
Length: 267
MTTVYGDLVRYRELFGNLFRRDVQAKYRGSVLGVAWTLANPALLMAVYLLVFSVLWKTPFGNEGHYALFLLVGLSAWIFFATSVQSASRSLLDNANLIRKTRFPRQLVPLSVVATQLISFGVMLGALLVLNFALLPRVRATEWLALPIGVALVAITGGLSLALASLNVLFRDIEFLVAALLLPLFFLTPVLYPLTDQQIASRQWVVDLIHWANPLSPPIEALHAVLFYGNLPSAGDTIYTVVAALVALALGAWVFMGVDDQIAVEV*