ggKbase home page

13_1_20cm_2_scaffold_158787_1

Organism: 13_1_20CM_2_Rokubacteria_69_58

near complete RP 46 / 55 MC: 1 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: comp(3..1817)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-54 factor n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MES1_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 40.5
  • Coverage: 385.0
  • Bit_score: 268
  • Evalue 1.50e-68
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated UNIPROT
DB: UniProtKB
  • Identity: 77.2
  • Coverage: 342.0
  • Bit_score: 530
  • Evalue 3.90e-147
rpoN; RNA polymerase sigma-54 factor similarity KEGG
DB: KEGG
  • Identity: 40.5
  • Coverage: 385.0
  • Bit_score: 268
  • Evalue 4.30e-69

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Rokubacteria_73_56 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 1815
ATGGCCATGGAAGCGCGCCTCTCGCTCCGGCAGAGCCAGCGGGTCGTCATGACCCCGCTGCTCCAGCAGGCCATCCAGCTCCTGCAGCTCTCCACGCTCGAGCTCCAGGAGGTCGTGCAGAAGGAGCTCCTCGAGAACCCGCTGTTGGAAGAGATGCCGGTGGACGGCGCCGAGACGCCGGACGCGGGCGAGGCCACGCCGAGCGCCGAGGCGACGCCGGCGCCGACGGTGGAGCCGATCACCGTCGATCCGCCGCCGACGGCCGAACGACAGACGGACGACCTGCCGTTCGACCCGATCTCCGTGATGTTCGACGAGCCGGAGGAGCGCTCCCTCGTCGCGCAGGAGGAGCGGGAGGACCTCCCGTTCGAGAACATGGTCCGCTCGGTCTCGTCGCTCGCCGACCACCTCGAGGAGCAACTCCGCTTCGTCACCGAGGACCCGGCGGCCCGGCGGATTGGCGCCGAGATCATCGGCAACCTCGACGAGGACGGGTACCTTCGCGCGGAGCTCGAGGAGATCGCCCAGCGGTGCGCCGCGACGCCCGAGGAGGTCGAGCGCGTCCTGACCGAGATGATCCAGAAATTCGACCCGATCGGCGTTGGCGCGCGCACGATCTCGGAGTGCCTCCTGCTCCAGCTGCGGTCGAACCCGCCCGTCGACCCGGTGTCGGTCGAGATCGTCGAGCGGCACTTCGAGGACCTGAGCCGCCGCCGCTACGCGGACATCGCGCGGGCGTTGAAGCTGTCGGCCGACCGGATCATGGAGTCGGTCGAAGAGATCATGGCGCTCGAGCCCAAGCCCGGCCGCCGCTTCGGCGGCAACGACTCGCGCTACATCGTGCCGGACGTCTTCGTCTACAAGCTCGGGAGCGACTACACGGTCATGCTGAACGAGGAGGGGATTCCTCGCCTGCGCGTGAACTCCCTCTACCGCTCGCTGCTCCGGAGCTCCGGCGACGAGGCCCGCCAGTACGTCGAGCAGAAGTTGCGCTCGGCCCTCTGGCTCATCAAGTCGGTCGACCAACGGCAAGGGCCTGCCCTATCTCCGGCCCCTGTCGCTCCGGGACGTCGGCGAAGACATCAGCATGCACGAGTCCACGATCAGCCGCGTGACGACCAACAAGTATGTCGAGACCCCCCAGGGGCTGTTCGAGCTCAAGTTCTTCTTCCACAGCGGCATCGCCTCCGGGGATGGCGAGATGGTCTCCTCCGTCTCGGTGAAGAAGATGATCCAGGATCTCCTGGGGAACGAGGACGCCACCAAGCCCCTGTCCGACCAGGAGGTCGCCGGGATCCTCAAGGGCCGCGGCCTCACGATCGCCCGGCGCACCGTGGCGAAGTACCGGGAGGAGCTCGGCATCCTGCCCTCGCACCAGCGCCGGCTCCAGCCACGCAAGCGGTGAGGGAGTCGGCGGGTTCCGGCGTCCGGGCCGTGGACGAGCGTCTGTCCTTCGTCTTCATCACCGGGCTCAGCGGCGCCGGGAAGAGCTACGCGATCAAGTGCTTCGAGGACATGGGCTTCTTCTGTGTCGACAACCTACCCACGACGCTCATTCCAACCTTCGCTGATCTGATCGCGCGGTCGGGCCAGACGATCCGTCGGGTGGCGCTGGGCGTGGACGTCCGGGAGGGCGAGTACCTGTCCCACCTGCTCGACGCGATCCACGAGCTCAAGACGCGCGGCCATCCCGTCGAGGTCCTCTTCCTCGAGGCGAGCGAGGAGAGTCTCGTCCGGCGGTACCATGAGACCCGCCGCCGCCACCCGCTGGCGGTCGATGGCAACGTTCTCGAGGGCATCCGCGCCGAGCGCAAG
PROTEIN sequence
Length: 605
MAMEARLSLRQSQRVVMTPLLQQAIQLLQLSTLELQEVVQKELLENPLLEEMPVDGAETPDAGEATPSAEATPAPTVEPITVDPPPTAERQTDDLPFDPISVMFDEPEERSLVAQEEREDLPFENMVRSVSSLADHLEEQLRFVTEDPAARRIGAEIIGNLDEDGYLRAELEEIAQRCAATPEEVERVLTEMIQKFDPIGVGARTISECLLLQLRSNPPVDPVSVEIVERHFEDLSRRRYADIARALKLSADRIMESVEEIMALEPKPGRRFGGNDSRYIVPDVFVYKLGSDYTVMLNEEGIPRLRVNSLYRSLLRSSGDEARQYVEQKLRSALWLIKSVDQRQGPALSPAPVAPGRRRRHQHARVHDQPRDDQQVCRDPPGAVRAQVLLPQRHRLRGWRDGLLRLGEEDDPGSPGERGRHQAPVRPGGRRDPQGPRPHDRPAHRGEVPGGARHPALAPAPAPATQAVRESAGSGVRAVDERLSFVFITGLSGAGKSYAIKCFEDMGFFCVDNLPTTLIPTFADLIARSGQTIRRVALGVDVREGEYLSHLLDAIHELKTRGHPVEVLFLEASEESLVRRYHETRRRHPLAVDGNVLEGIRAERK