ggKbase home page

13_1_20cm_2_scaffold_2128_13

Organism: 13_1_20CM_2_Rokubacteria_69_58

near complete RP 46 / 55 MC: 1 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: comp(8836..9381)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1) RepID=D7GDD3_PROFC similarity UNIREF
DB: UNIREF100
  • Identity: 43.8
  • Coverage: 169.0
  • Bit_score: 141
  • Evalue 6.30e-31
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1744 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium fre UNIPROT
DB: UniProtKB
  • Identity: 45.0
  • Coverage: 169.0
  • Bit_score: 144
  • Evalue 1.10e-31
rpoE; RNA polymerase sigma-70 factor, sigma-E factor similarity KEGG
DB: KEGG
  • Identity: 43.8
  • Coverage: 169.0
  • Bit_score: 141
  • Evalue 1.80e-31

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Propionibacterium freudenreichii → Propionibacterium → Propionibacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 546
ATGGGGGGCGGAGCGGGGACGGGCGCAGGCGCCGCGCTGGGGCGGGAGGCGTTGGCCTACGTCGACAGCCTGCACAACCTCGCGCGCTACCTGACGGGCAACGCGAGCGACGCCGACGACCTGGTCCAGGAGACGTACGCGCGGGCCCTCAAGGCGGCCGAGCGGTTCACGCCCGGGACGAATCTCAAGGCGTGGCTGTTCAGGATCCTGCGCAACACGTTCCTGAGCGCGTACCGGCGCGAGCGGAACAATCCGGTCAGCGGCGGGCTCGACACCGTGGACCCCGCGGCGCAAGGGGTCGCCGACGACCACTGGCTCCGCGACGACATGGAGCTCGACCGGCTCAGGAAGATCGTGGCCGGGGAGATCGAGGCGGCGCTGATGACGCTGTCGGACGAGGCGCGCACGGTGATCTTGCTGGACCTCGAGGGGCTCACCGAGGTGGAGGTCGCCCAGGTCGTCGGCTGCGCGGTGGGCACCGTGAAGTCACGGCTCGCGCGGGCGCGGTTGGCGCTCCGCCGGCAGCTCAAGGACTACGCGAGATAG
PROTEIN sequence
Length: 182
MGGGAGTGAGAALGREALAYVDSLHNLARYLTGNASDADDLVQETYARALKAAERFTPGTNLKAWLFRILRNTFLSAYRRERNNPVSGGLDTVDPAAQGVADDHWLRDDMELDRLRKIVAGEIEAALMTLSDEARTVILLDLEGLTEVEVAQVVGCAVGTVKSRLARARLALRRQLKDYAR*