ggKbase home page

13_1_40cm_2_scaffold_19_11

Organism: 13_1_40CM_2_Actinobacteria_65_8

partial RP 18 / 55 MC: 2 BSCG 21 / 51 MC: 1 ASCG 6 / 38
Location: 11795..12346

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) RepID=C0ZB38_BREBN similarity UNIREF
DB: UNIREF100
  • Identity: 34.4
  • Coverage: 183.0
  • Bit_score: 95
  • Evalue 7.00e-17
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_RIF_CHLX_72_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 35.7
  • Coverage: 171.0
  • Bit_score: 101
  • Evalue 1.40e-18
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 34.2
  • Coverage: 187.0
  • Bit_score: 95
  • Evalue 2.00e-17

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_RIF_CHLX_72_14_curated → RIF-CHLX → Bacteria

Sequences

DNA sequence
Length: 552
GTGCTCGACAGCAGGGAGCTCGACCCGGCAACCGAGTTCCGCCAGCTCTACGACCAGCAGTACGTCTCGGTATACCGCTCCATCCGTGGTGTCGTTCTGGACTCGGCCGCCGCCGAGGACCTCACGCAGGAAACCTTCGTGCGCGCCTACCGGGCGCGCCTACGCTACACGCCGACGGCTCCGCCGGGCGCCTGGCTCCGCCGGATCGGGATCAACCTCGCCATCTCCTACCTTCGCCGCCAGAAGCTGGCCAGGGTCCTGCCGGCCCGGCTATACGTCGCCCCAGACCGCAGGGAGTACGATCGGGCCGAGGCCCGGGACGTGGTGACCAAGGCGCTGTCGACACTGAGCCCGAAGCTGAGGGCGGCGATCATCCTCCATTACTACGACGGCCTGACCCGCGAGGAGATCGCGTCCGTGCTCGGGGTGCCGGCCGGAACGGTGGCCTCCCGGATCGCCAAGGCAGTCGCGATCATGCGGAAGTCAATTGGCAGCGATCAAGATTTCGGACCCGAGCGTTCGACTAATGAAGGTGCCCTACGTGGAAGATAA
PROTEIN sequence
Length: 184
VLDSRELDPATEFRQLYDQQYVSVYRSIRGVVLDSAAAEDLTQETFVRAYRARLRYTPTAPPGAWLRRIGINLAISYLRRQKLARVLPARLYVAPDRREYDRAEARDVVTKALSTLSPKLRAAIILHYYDGLTREEIASVLGVPAGTVASRIAKAVAIMRKSIGSDQDFGPERSTNEGALRGR*