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13_1_40cm_3_scaffold_614_2

Organism: 13_1_40CM_3_Acidobacteria_56_11

near complete RP 41 / 55 MC: 4 BSCG 42 / 51 MC: 2 ASCG 12 / 38
Location: comp(483..1118)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12556447 bin=CNBR_ACIDO species=Pseudomonas sp. K-62 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? similarity UNIREF
DB: UNIREF100
  • Identity: 65.0
  • Coverage: 183.0
  • Bit_score: 228
  • Evalue 7.90e-57
RNA polymerase sigma factor {ECO:0000313|EMBL:BAM13981.1}; TaxID=76885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. similarity UNIPROT
DB: UniProtKB
  • Identity: 60.3
  • Coverage: 179.0
  • Bit_score: 217
  • Evalue 2.00e-53
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 60.6
  • Coverage: 180.0
  • Bit_score: 208
  • Evalue 1.40e-51

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Taxonomy

Pseudomonas sp. K-62 → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 636
ATGGCGGCTATCAGAAAAGTTCACCGCCGTGGGCGTTTCAAATGTAACCAGTTGCGGAGGATCGCCGAACTAATGGATGTGCGTTCGATTGAGCCTGAACTCCGATCACTGATGGTCGCCGGGCTGGAAGGTGATGCGGCCGCGCATAAGATGCTGCTGGAAAAATTGAGCGTCCAGTTGCGTGGCTATTTCAAAGCGCAGCTGGGCCGCTATGGCCGAGACCCAGTGGAAGCCGAAGATCTGGTCCAGGAAGTATTGATTGCAGTCCACACCCGGCGACATACATATGATCGTTCGCAGCTCTTGACGCCGTGGGTTTACGCGATCGCGCGATACAAATTTTCCGATTACCTGCGTAGGAGCAAGATATCGAGGACGGACGTCCCGATCGAAGACGCAGAAGCGCTGACCGCTTACAACGACAGCGCACAAGTTGAAAGCAATTTAGATCTCGACAAACTGCTCGCTGGAATATCGCCAAAAACGCGGCAGGCCATTCAATACGTGAAACTCGAGGGTTTAAGCGTGAGCGAGGCAGCAGCACGATCCGGAATGTCGGAGTCCGCCGTCAAAGTAGCGGTTCATCGTGGACTGAAAGCTTTGGCGACGATGATTACGAAAAAGGAGCCGAGATGA
PROTEIN sequence
Length: 212
MAAIRKVHRRGRFKCNQLRRIAELMDVRSIEPELRSLMVAGLEGDAAAHKMLLEKLSVQLRGYFKAQLGRYGRDPVEAEDLVQEVLIAVHTRRHTYDRSQLLTPWVYAIARYKFSDYLRRSKISRTDVPIEDAEALTAYNDSAQVESNLDLDKLLAGISPKTRQAIQYVKLEGLSVSEAAARSGMSESAVKVAVHRGLKALATMITKKEPR*