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13_1_40cm_3_scaffold_8542_5

Organism: 13_1_40CM_3_Gemmatimonadetes_70_6

partial RP 14 / 55 MC: 1 BSCG 14 / 51 ASCG 7 / 38
Location: comp(4931..5824)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Y4_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 79.7
  • Coverage: 296.0
  • Bit_score: 469
  • Evalue 2.20e-129
  • rbh
RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 88.2
  • Coverage: 297.0
  • Bit_score: 524
  • Evalue 1.10e-145
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 79.7
  • Coverage: 296.0
  • Bit_score: 469
  • Evalue 6.20e-130

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Taxonomy

RLO_Gemmatimonadetes_68_9 → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 894
ATGGCCCGAGCCACGTCCGGTAAGGCGAAAGCGTTCTTTCGCGCTACACCGTCCGGAGCCTTTGACCAGTACCTGCAGGACATCCAAAAACTTCCGCTGATCCGCGACCCTGCCGAAGAGCGCCGTCTGGCGCGGCGGGTGCGCAAAGGTGACGAAAAAGCCGCCGAGCGGCTCGTCACAGCGAACCTCCGGTTCGTGATTTCTTACGTCAAGAAGTACCAGGGCCACGGCCTCGACCTCTCGGAGCTGGTCGCGATCGGCAACGAAGGGCTGCTCAAGGCCGTCAAGAAGTTCGATCCCGACCAGGGCGTGAAGTTCATCTCCTACGCGGTGTGGTGGGTGCGCCAGGCGGTGCTCAAGGCGCTGGCGGAGCAGACCCGCAGCGTGCGGATCCCGCTGAACCAGAACTCCCAGCTGATCCGGATGAGCCGCACCGAGACCTATCTGTCGCAGGAGCTGGGGCGCGAGCCCACCGACGACGAGATCGCCAAAGCGCTCGAGGACACGGTCGAGAACGTCCGCACCGCGCGCCGCATGACGGCCGCGGAGCTGTCGCTCGACGCGCCGGTGGACCGCAGCGACAAGGACGCGGCGACGCTGGGCGAGCGTTTCTCGGGACAGGAAGGGTTCGAGATCGAGGACCGCACCGACGGACGGCTGATGCGGGAGTTCATCGATCGCATCTTCCAGAAGTACCTGACCCCACGCGAGCGCAAGATCCTCTATCTCTATTACGGCCTCGAGGAAGGCAGCGAGGCGATGACGCTCGAGAAGATCGGCGCCCTGATGGGCGTGACGCGCGAGCGCATCCGCCAGATCCGCGAGCGGGCCTTCGAGAAGTTGCGCGAATCCCCGGATGGAAAAGCACTTAAAGGATTCTGGAGAGCAGCGTAA
PROTEIN sequence
Length: 298
MARATSGKAKAFFRATPSGAFDQYLQDIQKLPLIRDPAEERRLARRVRKGDEKAAERLVTANLRFVISYVKKYQGHGLDLSELVAIGNEGLLKAVKKFDPDQGVKFISYAVWWVRQAVLKALAEQTRSVRIPLNQNSQLIRMSRTETYLSQELGREPTDDEIAKALEDTVENVRTARRMTAAELSLDAPVDRSDKDAATLGERFSGQEGFEIEDRTDGRLMREFIDRIFQKYLTPRERKILYLYYGLEEGSEAMTLEKIGALMGVTRERIRQIRERAFEKLRESPDGKALKGFWRAA*