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13_1_40cm_scaffold_19054_12

Organism: 13_1_40CM_Rokubacteria_69_96

partial RP 40 / 55 MC: 1 BSCG 37 / 51 ASCG 10 / 38
Location: 12107..13678

Top 3 Functional Annotations

Value Algorithm Source
rpoD; RNA polymerase sigma factor RpoD (Sigma-70); K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 86.0
  • Coverage: 480.0
  • Bit_score: 795
  • Evalue 4.30e-227
RNA polymerase sigma factor RpoD id=3357851 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 similarity UNIREF
DB: UNIREF100
  • Identity: 69.4
  • Coverage: 527.0
  • Bit_score: 688
  • Evalue 4.10e-195
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 48.3
  • Coverage: 540.0
  • Bit_score: 455
  • Evalue 2.80e-125

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Taxonomy

R_Rokubacteria_73_56 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 1572
ATGAGTGAAGAGCCCAAGCTGGAGGAGCTGGACCGGCTGATCACGAGGGGGAAGCAGAAGGGCTTCCTCACCTACGACGAGGTCAACGACGCGCTACCGTCGGACATCGTCTCGCTCGATCAGCTCGACGACATCATGATGATGTTCGGCGCGATGGACATCGAGGTCGTCGACTCCGCGAAGGCGGGACGGCTCCCCTCAGAGGTCGGGCGCGAGCGCCAGCCGGCGCCGGCCGAGGAGGCCGACGACGACGGCCCCGCCGACTCGATCGACCTGACGCCCGGTCCCGTCGGCCGCACCGAGGATCCGGTCCGCCTCTATCTGCGCGAGATGGGCCGCGTCGCCCTCCTGACGCGCGAAGGCGAGATCGCACTCGCCAAGCGGATCGAGGAGGGCAAGAACCAGGTCACCGCCGCCATCCTCTCGACCAACCTCGCCCTCGAGCGCTTCCGCGAGCTGCGCGAGCAGCTCAAGGGCAGCGAGATCTCCATCAAGGAAGTCGTGGACGTCAACGAGGAGGAGTTCACCGAGGAGAAGGAGGATGAGCTCCGGCGGCAGGTGATCGCGGCCTTCGGCACGGTGGATCGGCTCCTCCGCGACCGCGACCGGCTCGTCGCCCAGGCCAAGAAACTCCGGCTCAAGGCCGGTGGCCGGAAGAAGACGAAGAAGGGCAAGGAGCCCGCGTGGCGGCGCCTCGAGATCCAGGCCCACCGGTACCAGGAGAAGGTGCTCGACAACCTCCGCAAGCTCAACATCGGCAACCAGATCATCGACCGCGAGGACGGAGACCCCGGCCGCCGCGGGCTCGTGCAGCGGCTCCGCGACCTCCTCGACGACATCGAGCGCGCCGAGCGTGTGATCAAGCTCTGGACCAACGGTCGACGCCCCTCGCCCGAGGAGGTCCAGAACCTCATCTACGTCTCGTTCCGCGACCCGGGCGTGGGCGCCATCAATGGCCAGGTCGGCGACCTCCACCTCAGGGCCGCCAAGAAGTTCCAGTCGCCCAAGGCGCAGCAGATCTGGGTCGCACAGCAGGAGATCAAGCTCGCCGAGCAGCGCGCCAACGCCAAGGCCGACGAGATCAAGCGCGTGATGACCATCATCCGGCAGGGCCAGGTCAAGGCGGCGCAGGCGAAGAAGGAGATGGTGGAGGCGAACCTGCGCCTCGTCATCTCCATCGCCAAGAAGTACACGAACCGCGGGCTGCAGTTCCTCGACCTCATCCAGGAAGGCAACATCGGCCTCATGAAGGCGGTCGATAAGTTCGAATATCGGCGTGGGTACAAGTTTTCAACCTACGCGACCTGGTGGATCCGGCAGGCGATCACGCGCGCCATCGCCGACCAGGCGCGCACGATCCGGATCCCCGTGCACATGATCGAGACGATCAACAAGCTCATCCGGACCTCGCGGCAGCTCGTGCAGGAGCTCGGCCGCGAGCCCACCCCGGAGGAGATCGCGGCGAAGATGGACGTCCCCGTGGACAAGGTGCGAAAAGTCCTGAAGATCGCGCAAGAGCCGATTTCACTCGAAACACCGATCGGAGAAGAAGAAGACAGCCACCTGGGCGAT
PROTEIN sequence
Length: 524
MSEEPKLEELDRLITRGKQKGFLTYDEVNDALPSDIVSLDQLDDIMMMFGAMDIEVVDSAKAGRLPSEVGRERQPAPAEEADDDGPADSIDLTPGPVGRTEDPVRLYLREMGRVALLTREGEIALAKRIEEGKNQVTAAILSTNLALERFRELREQLKGSEISIKEVVDVNEEEFTEEKEDELRRQVIAAFGTVDRLLRDRDRLVAQAKKLRLKAGGRKKTKKGKEPAWRRLEIQAHRYQEKVLDNLRKLNIGNQIIDREDGDPGRRGLVQRLRDLLDDIERAERVIKLWTNGRRPSPEEVQNLIYVSFRDPGVGAINGQVGDLHLRAAKKFQSPKAQQIWVAQQEIKLAEQRANAKADEIKRVMTIIRQGQVKAAQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQELGREPTPEEIAAKMDVPVDKVRKVLKIAQEPISLETPIGEEEDSHLGD