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08E140C01_10kDa_scaffold_3548_5

Organism: BJP_08E140C01_Ig2699_Hor_218_2014_10k_Pseudomonadale_63_1300

near complete RP 49 / 55 MC: 3 BSCG 46 / 51 MC: 1 ASCG 13 / 38 MC: 3
Location: comp(5869..6390)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1UG01_PSEME similarity UNIREF
DB: UNIREF100
  • Identity: 96.5
  • Coverage: 173.0
  • Bit_score: 321
  • Evalue 4.30e-85
  • rbh
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KJU75309.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/ similarity UNIPROT
DB: UniProtKB
  • Identity: 96.5
  • Coverage: 173.0
  • Bit_score: 322
  • Evalue 3.50e-85
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 91.3
  • Coverage: 173.0
  • Bit_score: 308
  • Evalue 1.10e-81
  • rbh

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Taxonomy

Pseudomonas pseudoalcaligenes → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 522
GTGAGCATCTCCAACCTAGACAGCGTATTCATCAGCCAGCGCACCCCGCTGCTGCGCACGCTGGTGAAAATCGTGAAGAACGCCAGCATCGCCGAGGAGCTGGTGCAGGAAACCTACCTGCGGGTCGCCCGTAGCCTGCGCGACAAACCGGTCGATCACCTCGAACCCTTTCTCTTCCAGACAGGCCGCAATCTGGCGTTCGACCACTTGCGCCGCGAGCGCATGCAGTCGAGAACCATGCTCGATGACGTGCCGGATGCAATCACGCAGGCCGTTCCGGCTCCGGGTTCATCCAGCGAAGACAGCCTGCACGCCGAGCGCCTGCTGCAACGACTGGGCAATGCGCTGGAGCAGTTGAGCGAACGCCAGCAGCGCATCTTCATCCTCAGCCGTCTGCATGGCCAGGGTTATGCGCAGATCGCTGCAGAGCTCGGTGTTTCAGCCAGCACGGTGCAGAAGGAGCTGAAACTGATCATGACCCTGTGCATGACCCTGCTCGAGCGCCTCGCGCCTCCGACATGA
PROTEIN sequence
Length: 174
VSISNLDSVFISQRTPLLRTLVKIVKNASIAEELVQETYLRVARSLRDKPVDHLEPFLFQTGRNLAFDHLRRERMQSRTMLDDVPDAITQAVPAPGSSSEDSLHAERLLQRLGNALEQLSERQQRIFILSRLHGQGYAQIAAELGVSASTVQKELKLIMTLCMTLLERLAPPT*