ggKbase home page

SCNpilot_BF_INOC_scaffold_1460_1

Organism: SCNpilot_BF_INOC_Clostridium_42_5_partial

partial RP 46 / 55 MC: 1 BSCG 40 / 51 MC: 2 ASCG 13 / 38 MC: 3
Location: 87..743

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, sigma-B/F/G subfamily n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHC0_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 62.6
  • Coverage: 214.0
  • Bit_score: 269
  • Evalue 3.20e-69
RNA polymerase sigma-70 factor, sigma-B/F/G subfamily {ECO:0000313|EMBL:EEG29207.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source similarity UNIPROT
DB: UniProtKB
  • Identity: 62.6
  • Coverage: 214.0
  • Bit_score: 269
  • Evalue 4.50e-69
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 56.7
  • Coverage: 215.0
  • Bit_score: 237
  • Evalue 3.80e-60

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

[Clostridium] methylpentosum → Ruminiclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 657
ATGATTGATCGTGATAAATTCATTGCCGATAATCTGGGGCTGGTGCATTCCTGCTGTCACAGGCTGACAGGCAGGGGGATTGAATACGACGACCTGTTCAGTGCCGGTTGCATCGGGCTTATTAAGGCATACAACGGTTTTGATGAAAGCCGTGGCTTTGCCTTTTCCACCTATGCCGTTCCGGTAATTCTCGGTGAAATTCGCAGACTGTTTCGTGACGGCGGCACTGTTAAGGTGAGCCGTACCTTAAAGGAGCTGTCCCTAAGGGCGGTCAGAGAACGGGACAGGCTGACAAAATCCTTGGGTTATGAACCGTCGGTCAATGAAGTTGCCGACTCGCTGGGAGTTTCGGGCGAAGAAGTCGCCGAAGCACTGACAGCCGCCCTGCCTGTGTTGTCCCTTACTTATGAAAGTGCGGACGGCGTGCAGGAATACGATCTGCCGGCAGAGGACATCGAGACCGAAATATCTGACGGATTGGCATTGAAAGAGGTAGTGAATTCTTTGGACCCGGCCGACCGAAGCTTAATCGTACTGCGGTATTTTAACTGCAGAACCCAGACGGAAACGGCAGAAGTGCTGGGAATGACCCAGGTGCAGGTATCCCGACGGGAAAAGGTGATTTTGGGAGAGCTGCGAAAAAAACTCTTGTTATAG
PROTEIN sequence
Length: 219
MIDRDKFIADNLGLVHSCCHRLTGRGIEYDDLFSAGCIGLIKAYNGFDESRGFAFSTYAVPVILGEIRRLFRDGGTVKVSRTLKELSLRAVRERDRLTKSLGYEPSVNEVADSLGVSGEEVAEALTAALPVLSLTYESADGVQEYDLPAEDIETEISDGLALKEVVNSLDPADRSLIVLRYFNCRTQTETAEVLGMTQVQVSRREKVILGELRKKLLL*