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SCNpilot_BF_INOC_Clostridium_42_5_partial

SCNpilot_bf_inoc_Clostridiales_43_6
In projects: SCNpilot_bf_inoc

Consensus taxonomy: Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

not very clear on time series ESOM

Displaying items 1-50 of 263 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_BF_INOC_scaffold_3673
Species: Paenibacillus sp. MSt1 (50%)
2 6158 bp 37.27 3.38 99.87
SCNpilot_BF_INOC_scaffold_14044
Genus: Paenibacillus (66.67%)
3 5242 bp 40.50 3.45 94.72
SCNpilot_BF_INOC_scaffold_2768
Order: Clostridiales (66.67%)
3 7113 bp 48.26 5.72 96.50
SCNpilot_BF_INOC_scaffold_4083
Phylum: Firmicutes (100%)
3 5129 bp 38.86 3.77 98.67
SCNpilot_BF_INOC_scaffold_2724
Class: Bacilli (66.67%)
3 7225 bp 29.88 4.00 95.05
SCNpilot_BF_INOC_scaffold_4089
Genus: Clostridium (66.67%)
3 5125 bp 42.75 5.09 87.92
SCNpilot_BF_INOC_scaffold_6159
Genus: Clostridium (66.67%)
3 6023 bp 36.08 3.42 92.25
SCNpilot_BF_INOC_scaffold_9962
Species: Desulfosporosinus acidiphilus (66.67%)
3 5902 bp 44.76 6.85 98.05
SCNpilot_BF_INOC_scaffold_3701
Species: uncultured bacterium (gcode 4) (50%)
4 5594 bp 49.57 4.44 95.46
SCNpilot_BF_INOC_scaffold_6194
Species: Paenibacillus sp. oral taxon 786 (50%)
4 5667 bp 39.90 3.37 91.58
SCNpilot_BF_INOC_scaffold_9338
Species: [Clostridium] spiroforme (50%)
4 8093 bp 41.42 7.51 87.59
SCNpilot_BF_INOC_scaffold_4432
Species: BJP_IG2157_Clostridiales_52_13 (100%)
4 5387 bp 49.95 4.61 72.23
SCNpilot_BF_INOC_scaffold_14710
Species: Youngiibacter fragilis (75%)
4 5233 bp 35.60 3.41 63.41
SCNpilot_BF_INOC_scaffold_3431 4 5959 bp 33.04 5.64 78.54
SCNpilot_BF_INOC_scaffold_6347
Order: Clostridiales (50%)
4 7002 bp 38.89 4.41 82.52
SCNpilot_BF_INOC_scaffold_4532
Genus: Paenibacillus (50%)
4 8907 bp 45.09 5.24 89.69
SCNpilot_BF_INOC_scaffold_4147
Species: BJP_IG2157_Clostridiales_52_13 (100%)
4 5063 bp 50.92 5.01 89.77
SCNpilot_BF_INOC_scaffold_9683
Genus: Clostridium (50%)
4 5325 bp 44.41 4.01 72.34
SCNpilot_BF_INOC_scaffold_4398
Order: Clostridiales (50%)
4 6113 bp 47.13 5.17 81.32
SCNpilot_BF_INOC_scaffold_2848
Domain: Bacteria (75%)
4 6949 bp 29.24 5.27 85.83
SCNpilot_BF_INOC_scaffold_6193
Order: Clostridiales (80%)
5 5156 bp 34.21 4.58 82.04
SCNpilot_BF_INOC_scaffold_12377
Order: Clostridiales (60%)
5 5824 bp 37.89 3.71 79.33
SCNpilot_BF_INOC_scaffold_6856
Order: Clostridiales (80%)
5 5551 bp 36.37 3.62 66.85
SCNpilot_BF_INOC_scaffold_9832
Order: Clostridiales (60%)
5 5590 bp 34.60 4.09 89.52
SCNpilot_BF_INOC_scaffold_9834
Domain: Bacteria (100%)
5 5991 bp 35.44 4.02 82.87
SCNpilot_BF_INOC_scaffold_5600
Domain: Bacteria (60%)
5 5262 bp 48.63 4.34 76.62
SCNpilot_BF_INOC_scaffold_4129
Phylum: Firmicutes (80%)
5 5084 bp 43.08 5.38 86.62
SCNpilot_BF_INOC_scaffold_2285
Order: Clostridiales (80%)
5 8600 bp 46.66 5.20 62.37
SCNpilot_BF_INOC_scaffold_3023
Genus: Clostridium (60%)
5 6628 bp 40.10 6.51 96.91
SCNpilot_BF_INOC_scaffold_5522
Order: Clostridiales (80%)
5 5238 bp 48.55 5.46 90.84
SCNpilot_BF_INOC_scaffold_6782
Domain: Bacteria (60%)
5 6064 bp 38.92 3.19 88.85
SCNpilot_BF_INOC_scaffold_10230
Genus: Streptococcus (60%)
5 5255 bp 31.49 4.44 72.45
SCNpilot_BF_INOC_scaffold_6537
Class: Clostridia (60%)
5 6164 bp 42.68 3.14 92.13
SCNpilot_BF_INOC_scaffold_8114
Genus: Clostridium (60%)
5 6019 bp 38.00 4.00 63.45
SCNpilot_BF_INOC_scaffold_4897
Phylum: Firmicutes (66.67%)
6 5154 bp 42.26 3.56 91.56
SCNpilot_BF_INOC_scaffold_9774
Order: Clostridiales (66.67%)
6 5271 bp 33.62 4.24 68.24
SCNpilot_BF_INOC_scaffold_3080
Order: Bacillales (50%)
6 6516 bp 46.49 5.51 97.42
SCNpilot_BF_INOC_scaffold_5776
Class: Clostridia (50%)
6 5593 bp 44.93 4.76 85.18
SCNpilot_BF_INOC_scaffold_3407
Genus: Ruminiclostridium (66.67%)
6 5990 bp 46.71 7.08 48.63
SCNpilot_BF_INOC_scaffold_8441
Species: Alkaliphilus oremlandii (50%)
6 5668 bp 38.73 3.85 88.34
SCNpilot_BF_INOC_scaffold_4125
Class: Clostridia (50%)
6 5094 bp 36.38 4.09 87.10
SCNpilot_BF_INOC_scaffold_5489
Order: Clostridiales (50%)
6 8135 bp 44.30 4.47 75.60
SCNpilot_BF_INOC_scaffold_9366 6 6157 bp 40.65 4.89 67.63
SCNpilot_BF_INOC_scaffold_3224
Genus: Clostridium (50%)
6 7667 bp 45.12 5.63 85.03
SCNpilot_BF_INOC_scaffold_5107
Domain: Bacteria (100%)
6 5836 bp 34.13 3.35 70.48
SCNpilot_BF_INOC_scaffold_18920
Order: Clostridiales (83.33%)
6 5157 bp 32.75 3.65 83.89
SCNpilot_BF_INOC_scaffold_3761
Order: Clostridiales (50%)
6 5502 bp 44.11 5.88 88.06
SCNpilot_BF_INOC_scaffold_9233
Phylum: Firmicutes (50%)
6 5472 bp 34.38 7.06 95.39
SCNpilot_BF_INOC_scaffold_2729
Order: Clostridiales (66.67%)
6 7216 bp 46.20 6.30 94.25
SCNpilot_BF_INOC_scaffold_6534
Order: Clostridiales (83.33%)
6 5412 bp 35.35 5.06 54.38
Displaying items 1-50 of 263 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.