S4JAR1_22_3

Annotations

1. ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
2. You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
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The search box searches a snapshot of the information in the database and does not support wild cards (e.g. '*' or '%').

You can search by gene name as follows:

• full gene name : UBA_LeptoII_Scaffold_8241_GENE_539
• contig/scaffold abbreviated : UBA_LeptoII_Scaff_8241_GENE_539 (or "cont" for contig)
• locus_id : UBAL2_82410539
• just scaffold or contig and a number : 8241_539
• organism and scaffold/contig and number : LeptoII_8241_539

You can also search by annotation - you can enter any word that might be found in the annotation fields. If the annotation for a gene is Ferredoxin oxidoreductase gamma subunit 517295:517993 forward MW:25534 you would get hits for any word:

• Ferredoxin
• oxidoreductase
• gamma
• subunit
• 517295:517993
• forward
• MW:25534

Any combinations of the above words work as well

• oxidoreductase gamma subunit

Finally, you can add in the organism name as well. To only find those oxidoreductases from A-plasma, you might search for either of these:

• aplasma oxidoreductase
• apl oxidoreductase