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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 601-650 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_6752
Order: Rhizobiales (50%)
10 11957 bp 65.44 4.49 92.33
scnpilot_cont_500_p_scaffold_3000
Order: Rhizobiales (50%)
10 11634 bp 65.44 5.30 91.77
scnpilot_cont_500_p_scaffold_2827
Class: Alphaproteobacteria (60%)
10 15504 bp 64.51 4.76 88.39
scnpilot_cont_500_p_scaffold_12663 10 3605 bp 62.72 9.53 73.98
scnpilot_cont_500_p_scaffold_4232
Species: Rhizobium tropici (60%)
10 8829 bp 59.17 4.89 75.40
scnpilot_cont_500_p_scaffold_3008
Species: Rhizobium tropici (80%)
10 11619 bp 61.24 3.99 91.89
scnpilot_cont_500_p_scaffold_12154 10 3712 bp 60.56 6.63 86.96
scnpilot_cont_500_p_scaffold_11259 10 3924 bp 58.56 6.00 81.65
scnpilot_cont_500_p_scaffold_5973
Species: Cellulomonas fimi (50%)
10 7163 bp 74.13 4.73 93.19
scnpilot_cont_500_p_scaffold_15933 10 3097 bp 54.89 6.59 80.79
scnpilot_cont_500_p_scaffold_7142
Class: Alphaproteobacteria (50%)
10 5565 bp 55.22 4.26 100.76
scnpilot_cont_500_p_scaffold_9212
Species: Rhizobium tropici (70%)
10 7578 bp 60.77 3.56 86.94
scnpilot_cont_500_p_scaffold_6262
Genus: Cellulomonas (90%)
10 10195 bp 71.55 4.59 95.58
scnpilot_cont_500_p_scaffold_12167 10 3709 bp 47.53 5.01 76.35
scnpilot_cont_500_p_scaffold_3280
Species: Rhodobacter sphaeroides (70%)
10 10900 bp 63.26 5.60 94.43
scnpilot_cont_500_p_scaffold_5478
Species: Rhizobium tropici (90%)
10 7051 bp 61.13 3.17 85.31
scnpilot_cont_500_p_scaffold_13063 10 3527 bp 57.81 6.63 92.97
scnpilot_cont_500_p_scaffold_22079
Phylum: Proteobacteria (50%)
10 4669 bp 66.89 2.44 90.08
scnpilot_cont_500_p_scaffold_5481
Order: Rhizobiales (80%)
10 7048 bp 64.34 5.21 83.39
scnpilot_cont_500_p_scaffold_7162
Class: Actinobacteria (50%)
10 9105 bp 66.24 4.60 78.72
scnpilot_cont_500_p_scaffold_3294
Order: Micrococcales (60%)
10 10854 bp 75.18 5.24 94.39
scnpilot_cont_500_p_scaffold_4007
Class: Actinobacteria (70%)
10 9247 bp 66.68 3.57 73.32
scnpilot_cont_500_p_scaffold_14103 10 3356 bp 60.97 7.20 93.15
scnpilot_cont_500_p_scaffold_4776
Order: Rhizobiales (50%)
10 7945 bp 63.00 4.85 82.35
scnpilot_cont_500_p_scaffold_7425
Species: Rhizobium tropici (50%)
10 8231 bp 58.90 3.92 91.74
scnpilot_cont_500_p_scaffold_4270
Order: Rhizobiales (70%)
10 8768 bp 65.23 4.69 84.41
scnpilot_cont_500_p_scaffold_8928 10 4650 bp 54.65 2.71 70.45
scnpilot_cont_500_p_scaffold_11557
Domain: Bacteria (50%)
10 5517 bp 65.16 4.02 70.75
scnpilot_cont_500_p_scaffold_11558 10 3848 bp 55.56 8.38 83.26
scnpilot_cont_500_p_scaffold_4279
Class: Alphaproteobacteria (70%)
10 8747 bp 57.06 3.50 85.95
scnpilot_cont_500_p_scaffold_7186
Species: Acidomonas methanolica (50%)
10 5535 bp 57.16 3.06 73.93
scnpilot_cont_500_p_scaffold_10931
Species: Rhizobium tropici (60%)
10 7629 bp 59.97 3.28 89.54
scnpilot_cont_500_p_scaffold_3316
Species: Rhizobium tropici (100%)
10 10804 bp 60.60 4.21 93.52
scnpilot_cont_500_p_scaffold_3061
Phylum: Proteobacteria (50%)
10 11480 bp 65.10 5.68 92.77
scnpilot_cont_500_p_scaffold_3062
Order: Rhizobiales (100%)
10 11478 bp 66.52 4.22 97.78
scnpilot_cont_500_p_scaffold_4032
Order: Rhizobiales (60%)
10 9180 bp 64.87 3.66 80.88
scnpilot_cont_500_p_scaffold_4800
Order: Rhizobiales (60%)
10 7903 bp 66.68 4.59 92.74
scnpilot_cont_500_p_scaffold_8434
Phylum: Proteobacteria (70%)
10 7991 bp 60.81 4.39 91.64
scnpilot_cont_500_p_scaffold_4036
Order: Burkholderiales (60%)
10 11114 bp 59.11 7.23 80.79
scnpilot_cont_500_p_scaffold_5518
Genus: Burkholderia (60%)
10 7014 bp 60.17 9.54 91.92
scnpilot_cont_500_p_scaffold_3326
Class: Actinobacteria (50%)
10 10782 bp 68.81 5.47 90.51
scnpilot_cont_500_p_scaffold_4042
Genus: Rhizobium (50%)
10 9166 bp 59.40 3.91 91.22
scnpilot_cont_500_p_scaffold_4298
Order: Rhizobiales (80%)
10 8717 bp 65.56 4.59 91.65
scnpilot_cont_500_p_scaffold_10179 10 4221 bp 45.91 3.98 68.59
scnpilot_cont_500_p_scaffold_6060
Genus: Nitrobacter (80%)
10 6437 bp 62.72 3.91 76.57
scnpilot_cont_500_p_scaffold_5269
Order: Rhizobiales (70%)
10 7296 bp 55.50 4.91 83.43
scnpilot_cont_500_p_scaffold_8957
Genus: Rhizobium (80%)
10 5159 bp 60.26 3.84 92.11
scnpilot_cont_500_p_scaffold_5014
Genus: Microbacterium (80%)
10 7615 bp 70.99 3.60 94.12
scnpilot_cont_500_p_scaffold_2905
Genus: Cellulomonas (50%)
10 11942 bp 74.28 5.34 94.28
scnpilot_cont_500_p_scaffold_3594
Order: Rhizobiales (70%)
10 10141 bp 65.31 3.95 95.26
Displaying items 601-650 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.