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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 81301-81350 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_82843 3 1087 bp 51.06 1.93 109.02
scnpilot_cont_500_p_scaffold_72809 2 1186 bp 43.25 3.29 109.02
scnpilot_cont_500_p_scaffold_51132 5 1491 bp 59.09 2.62 109.05
scnpilot_cont_500_p_scaffold_47186
Species: Brucella suis (50%)
2 1570 bp 67.52 2.96 109.11
scnpilot_cont_500_p_scaffold_75466 2 1157 bp 45.29 3.63 109.16
scnpilot_cont_500_p_scaffold_89735 3 1030 bp 46.41 3.20 109.22
scnpilot_cont_500_p_scaffold_61135
Domain: Bacteria (66.67%)
3 1329 bp 63.81 2.26 109.26
scnpilot_cont_500_p_scaffold_85423 3 1065 bp 57.28 5.49 109.30
scnpilot_cont_500_p_scaffold_85445 2 1065 bp 58.78 2.82 109.30
scnpilot_cont_500_p_scaffold_46592 4 1583 bp 56.48 2.94 109.35
scnpilot_cont_500_p_scaffold_61281
Species: Beggiatoa sp. PS (50%)
2 1327 bp 59.91 2.03 109.42
scnpilot_cont_500_p_scaffold_88547 2 1039 bp 60.06 1.88 109.43
scnpilot_cont_500_p_scaffold_88943 2 1036 bp 43.05 3.91 109.46
scnpilot_cont_500_p_scaffold_78823 2 1123 bp 57.08 2.67 109.53
scnpilot_cont_500_p_scaffold_85619 4 1064 bp 65.41 6.63 109.68
scnpilot_cont_500_p_scaffold_80393
Species: Acanthamoeba castellanii (66.67%)
3 1109 bp 50.50 3.52 109.83
scnpilot_cont_500_p_scaffold_50482
Species: Hyaloperonospora arabidopsidis (50%)
2 1504 bp 63.70 9.47 109.91
scnpilot_cont_500_p_scaffold_73006
Species: Polysphondylium pallidum (50%)
2 1184 bp 56.76 2.03 109.97
scnpilot_cont_500_p_scaffold_82777 3 1088 bp 54.60 7.58 110.02
scnpilot_cont_500_p_scaffold_71823 3 1197 bp 61.57 2.01 110.02
scnpilot_cont_500_p_scaffold_54128
Species: Crassostrea gigas (50%)
2 1439 bp 45.38 7.30 110.29
scnpilot_cont_500_p_scaffold_88896 4 1036 bp 62.45 1.74 110.33
scnpilot_cont_500_p_scaffold_83925 2 1078 bp 63.54 1.67 110.48
scnpilot_cont_500_p_scaffold_87880
Species: Polysphondylium pallidum (50%)
2 1045 bp 60.10 5.31 110.53
scnpilot_cont_500_p_scaffold_74170 2 1171 bp 57.90 2.05 110.67
scnpilot_cont_500_p_scaffold_41008
Species: Opisthorchis viverrini (50%)
2 1716 bp 45.45 13.20 110.84
scnpilot_cont_500_p_scaffold_87933
Species: Dictyostelium fasciculatum (50%)
2 1044 bp 64.66 11.35 110.92
scnpilot_cont_500_p_scaffold_50328 2 1506 bp 56.64 6.97 110.96
scnpilot_cont_500_p_scaffold_72295 2 1192 bp 64.51 6.92 110.99
scnpilot_cont_500_p_scaffold_71073 2 1205 bp 64.15 2.61 111.04
scnpilot_cont_500_p_scaffold_82899 3 1087 bp 66.15 1.66 111.22
scnpilot_cont_500_p_scaffold_58379 3 1369 bp 67.13 6.03 111.32
scnpilot_cont_500_p_scaffold_112006
Species: R_Alphaproteobacteria_66_14 (100%)
2 1222 bp 66.78 2.58 111.46
scnpilot_cont_500_p_scaffold_92859 2 1006 bp 49.60 3.58 111.53
scnpilot_cont_500_p_scaffold_59707 3 1349 bp 64.42 2.34 111.64
scnpilot_cont_500_p_scaffold_55347 2 1418 bp 45.56 8.04 111.71
scnpilot_cont_500_p_scaffold_72711 3 1187 bp 52.99 3.41 111.71
scnpilot_cont_500_p_scaffold_81953 2 1095 bp 62.74 1.78 111.78
scnpilot_cont_500_p_scaffold_89659 2 1030 bp 53.88 1.46 111.85
scnpilot_cont_500_p_scaffold_56321 2 1401 bp 43.83 10.81 111.99
scnpilot_cont_500_p_scaffold_87240
Species: Capsaspora owczarzaki (50%)
2 1050 bp 60.00 1.71 112.00
scnpilot_cont_500_p_scaffold_68254 3 1237 bp 41.23 1.94 112.04
scnpilot_cont_500_p_scaffold_77540 2 1136 bp 45.33 3.70 112.24
scnpilot_cont_500_p_scaffold_83650
Species: Nitrosospira multiformis (50%)
2 1080 bp 43.43 3.06 112.50
scnpilot_cont_500_p_scaffold_35731
Genus: Delftia (50%)
4 1875 bp 48.27 8.96 112.64
scnpilot_cont_500_p_scaffold_91011
Species: Ostreococcus tauri (50%)
2 1020 bp 63.53 2.06 112.65
scnpilot_cont_500_p_scaffold_79141 2 1121 bp 42.73 9.77 112.67
scnpilot_cont_500_p_scaffold_89818 2 1029 bp 57.82 1.46 112.83
scnpilot_cont_500_p_scaffold_88979
Species: Panstrongylus megistus (50%)
2 1036 bp 66.60 1.30 112.93
scnpilot_cont_500_p_scaffold_50966 4 1495 bp 60.47 4.62 112.98
Displaying items 81301-81350 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.