ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %

Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22

Displaying items 79451-79500 of 81380 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_cont_500_p_scaffold_81410 Species: Ochrobactrum sp. EGD-AQ16 (50%)	2	1099 bp	65.06	2.73	100.18
scnpilot_cont_500_p_scaffold_81831 Species: Sphingobacterium spiritivorum (50%)	2	1096 bp	44.25	2.19	100.18
scnpilot_cont_500_p_scaffold_43962 Species: Microbacterium testaceum (100%)	2	1644 bp	65.09	1.92	100.18
scnpilot_cont_500_p_scaffold_11632 Species: Legionella parisiensis (50%)	2	3833 bp	42.58	2.50	100.18
scnpilot_cont_500_p_scaffold_27701	4	2189 bp	64.50	6.03	100.18
scnpilot_cont_500_p_scaffold_82213	2	1093 bp	59.74	5.90	100.18
scnpilot_cont_500_p_scaffold_82114 Species: Singulisphaera acidiphila (100%)	2	1093 bp	66.33	1.10	100.18
scnpilot_cont_500_p_scaffold_27850 Species: R_Alphaproteobacteria_66_14 (100%)	3	2183 bp	68.39	3.09	100.18
scnpilot_cont_500_p_scaffold_82473	2	1090 bp	67.43	1.93	100.18
scnpilot_cont_500_p_scaffold_83223 Species: Aquamicrobium defluvii (100%)	2	1635 bp	68.01	2.39	100.18
scnpilot_cont_500_p_scaffold_82801 Species: Pelobacter propionicus (50%)	2	1087 bp	72.13	1.52	100.18
scnpilot_cont_500_p_scaffold_28063 Species: R_Alphaproteobacteria_66_14 (100%)	2	2174 bp	66.33	3.04	100.18
scnpilot_cont_500_p_scaffold_19518 Order: Rhizobiales (66.67%)	3	2713 bp	59.31	3.76	100.18
scnpilot_cont_500_p_scaffold_83166 Species: Methylobacterium sp. GXF4 (50%)	2	1084 bp	63.01	1.80	100.18
scnpilot_cont_500_p_scaffold_83239	2	1084 bp	64.94	7.47	100.18
scnpilot_cont_500_p_scaffold_83518 Species: Acidovorax temperans (50%)	2	1081 bp	67.44	1.67	100.18
scnpilot_cont_500_p_scaffold_83570 Species: Mycobacterium arupense (50%)	2	1081 bp	74.01	3.05	100.18
scnpilot_cont_500_p_scaffold_19655 Order: Flavobacteriales (66.67%)	3	2701 bp	41.36	2.61	100.18
scnpilot_cont_500_p_scaffold_83828 Species: Rhizobium etli (50%)	2	1078 bp	59.46	3.62	100.19
scnpilot_cont_500_p_scaffold_83864 Species: Sinorhizobium meliloti (50%)	2	1078 bp	67.35	1.81	100.19
scnpilot_cont_500_p_scaffold_45243 Species: Colletotrichum graminicola (50%)	2	1614 bp	62.76	7.90	100.19
scnpilot_cont_500_p_scaffold_84240 Species: Hyphomicrobium denitrificans (100%)	2	1075 bp	61.58	2.23	100.19
scnpilot_cont_500_p_scaffold_84546 Species: Pseudomonas sp. CMAA1215 (50%)	2	1072 bp	64.37	2.24	100.19
scnpilot_cont_500_p_scaffold_84639 Species: Burkholderia sp. AU4i (50%)	2	1072 bp	64.83	1.26	100.19
scnpilot_cont_500_p_scaffold_84647 Species: Chthoniobacter flavus (100%)	2	1072 bp	61.29	1.96	100.19
scnpilot_cont_500_p_scaffold_85000 Species: Nitrobacter hamburgensis (50%)	2	1069 bp	66.98	2.39	100.19
scnpilot_cont_500_p_scaffold_84942 Species: GWC2_Rokubacteria_70_16_curated (50%)	2	1069 bp	64.92	2.95	100.19
scnpilot_cont_500_p_scaffold_84974	2	1069 bp	49.86	3.93	100.19
scnpilot_cont_500_p_scaffold_15127 Genus: Ochrobactrum (66.67%)	3	3204 bp	66.39	2.62	100.19
scnpilot_cont_500_p_scaffold_45778 Species: Phyllobacterium sp. YR531 (50%)	2	1602 bp	67.42	3.46	100.19
scnpilot_cont_500_p_scaffold_85356 Species: Leifsonia aquatica (100%)	2	1066 bp	72.42	1.69	100.19
scnpilot_cont_500_p_scaffold_85311 Species: African swine fever virus (50%)	2	1066 bp	25.14	1.13	100.19
scnpilot_cont_500_p_scaffold_85335 Species: Acidovorax delafieldii (50%)	2	1066 bp	66.14	1.69	100.19
scnpilot_cont_500_p_scaffold_85349 Species: Microbacterium oxydans (50%)	2	1066 bp	72.42	1.69	100.19
scnpilot_cont_500_p_scaffold_85353 Species: Streptomyces sp. AcH 505 (100%)	2	1066 bp	67.73	1.69	100.19
scnpilot_cont_500_p_scaffold_85683 Species: Variovorax paradoxus (50%)	2	1063 bp	69.33	2.82	100.19
scnpilot_cont_500_p_scaffold_85692 Species: R_Alphaproteobacteria_66_14 (100%)	2	1063 bp	68.49	3.10	100.19
scnpilot_cont_500_p_scaffold_85733 Species: Variovorax sp. CF313 (50%)	2	1063 bp	70.27	1.69	100.19
scnpilot_cont_500_p_scaffold_15271 Species: Acidovorax sp. MR-S7 (100%)	4	3183 bp	64.88	2.69	100.19
scnpilot_cont_500_p_scaffold_86035	2	1060 bp	55.85	1.70	100.19
scnpilot_cont_500_p_scaffold_86072 Species: RIFOXYA1_FULL_Xanthomonadales_68_6_curated (50%)	2	1060 bp	70.28	1.84	100.19
scnpilot_cont_500_p_scaffold_86077 Species: BJP_IG2103_TM7_39_1400 (50%)	2	1060 bp	47.36	2.55	100.19
scnpilot_cont_500_p_scaffold_86107 Species: Variovorax paradoxus (100%)	2	1060 bp	70.28	1.70	100.19
scnpilot_cont_500_p_scaffold_86478 Species: Ralstonia sp. PBA (50%)	2	1057 bp	70.39	1.99	100.19
scnpilot_cont_500_p_scaffold_86352 Species: Stegodyphus mimosarum (50%)	2	1057 bp	60.74	4.68	100.19
scnpilot_cont_500_p_scaffold_86390 Species: Rhodanobacter spathiphylli (100%)	2	1057 bp	73.23	2.13	100.19
scnpilot_cont_500_p_scaffold_86425 Species: Spirosoma radiotolerans (100%)	2	1057 bp	47.87	1.70	100.19
scnpilot_cont_500_p_scaffold_86449 Species: Agrobacterium tumefaciens (50%)	2	1057 bp	61.21	1.42	100.19
scnpilot_cont_500_p_scaffold_86764 Species: Microbacterium ginsengisoli (50%)	2	1054 bp	64.14	2.13	100.19
scnpilot_cont_500_p_scaffold_86785 Species: Novosphingobium sp. MD-1 (50%)	2	1054 bp	68.98	2.70	100.19

Displaying items 79451-79500 of 81380 in total

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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