ggKbase home page
Advanced Search
Search Help

SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 1-50 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_92935 2 1005 bp 58.81 1.49 119.40
scnpilot_cont_500_p_scaffold_82829 3 1087 bp 62.74 6.07 118.68
scnpilot_cont_500_p_scaffold_81674 2 1097 bp 45.67 5.47 117.05
scnpilot_cont_500_p_scaffold_84355
Species: Capitella teleta (50%)
2 1074 bp 65.08 4.33 117.04
scnpilot_cont_500_p_scaffold_82375 2 1091 bp 60.49 2.06 116.04
scnpilot_cont_500_p_scaffold_86262
Species: Spirosoma linguale (50%)
2 1058 bp 50.28 1.13 115.97
scnpilot_cont_500_p_scaffold_82326
Species: Danio rerio (50%)
2 1092 bp 46.25 7.14 115.93
scnpilot_cont_500_p_scaffold_90286 2 1025 bp 58.93 1.46 115.90
scnpilot_cont_500_p_scaffold_85068 2 1068 bp 64.89 1.97 115.73
scnpilot_cont_500_p_scaffold_167003
Species: Rhodococcus ruber (50%)
2 1217 bp 75.35 2.47 115.61
scnpilot_cont_500_p_scaffold_67918
Species: Neochlamydia sp. EPS4 (50%)
2 1242 bp 56.20 1.57 115.22
scnpilot_cont_500_p_scaffold_78345 3 1128 bp 63.56 6.52 115.16
scnpilot_cont_500_p_scaffold_86822 2 1054 bp 59.68 1.71 114.99
scnpilot_cont_500_p_scaffold_71134
Species: Oncorhynchus mykiss (50%)
2 1204 bp 49.34 3.24 114.37
scnpilot_cont_500_p_scaffold_80197
Species: Wickerhamomyces ciferrii (50%)
2 1111 bp 54.37 6.21 114.22
scnpilot_cont_500_p_scaffold_71681 3 1198 bp 55.34 1.75 114.19
scnpilot_cont_500_p_scaffold_87977 3 1044 bp 64.85 3.74 114.08
scnpilot_cont_500_p_scaffold_79100 2 1121 bp 40.59 4.95 114.01
scnpilot_cont_500_p_scaffold_71231
Species: Caulobacter sp. AP07 (50%)
2 1203 bp 57.77 1.12 113.72
scnpilot_cont_500_p_scaffold_90525
Species: Hyphomicrobium denitrificans (50%)
2 1024 bp 58.59 1.90 113.67
scnpilot_cont_500_p_scaffold_92837 2 1006 bp 55.37 8.20 113.62
scnpilot_cont_500_p_scaffold_84490 3 1073 bp 61.23 6.15 113.51
scnpilot_cont_500_p_scaffold_70049
Species: Polysphondylium pallidum (50%)
2 1216 bp 55.26 2.71 113.49
scnpilot_cont_500_p_scaffold_81796 2 1096 bp 59.22 7.53 113.32
scnpilot_cont_500_p_scaffold_92808 2 1006 bp 55.77 2.09 113.32
scnpilot_cont_500_p_scaffold_70604 3 1210 bp 49.34 4.21 113.31
scnpilot_cont_500_p_scaffold_93106 3 1004 bp 58.17 2.69 113.25
scnpilot_cont_500_p_scaffold_84406 3 1074 bp 55.77 1.96 113.13
scnpilot_cont_500_p_scaffold_51822
Species: Acidovorax ebreus (66.67%)
3 1478 bp 66.24 2.74 113.06
scnpilot_cont_500_p_scaffold_68990 2 1229 bp 64.85 1.95 113.02
scnpilot_cont_500_p_scaffold_50966 4 1495 bp 60.47 4.62 112.98
scnpilot_cont_500_p_scaffold_88979
Species: Panstrongylus megistus (50%)
2 1036 bp 66.60 1.30 112.93
scnpilot_cont_500_p_scaffold_89818 2 1029 bp 57.82 1.46 112.83
scnpilot_cont_500_p_scaffold_79141 2 1121 bp 42.73 9.77 112.67
scnpilot_cont_500_p_scaffold_91011
Species: Ostreococcus tauri (50%)
2 1020 bp 63.53 2.06 112.65
scnpilot_cont_500_p_scaffold_35731
Genus: Delftia (50%)
4 1875 bp 48.27 8.96 112.64
scnpilot_cont_500_p_scaffold_83650
Species: Nitrosospira multiformis (50%)
2 1080 bp 43.43 3.06 112.50
scnpilot_cont_500_p_scaffold_77540 2 1136 bp 45.33 3.70 112.24
scnpilot_cont_500_p_scaffold_68254 3 1237 bp 41.23 1.94 112.04
scnpilot_cont_500_p_scaffold_87240
Species: Capsaspora owczarzaki (50%)
2 1050 bp 60.00 1.71 112.00
scnpilot_cont_500_p_scaffold_56321 2 1401 bp 43.83 10.81 111.99
scnpilot_cont_500_p_scaffold_89659 2 1030 bp 53.88 1.46 111.85
scnpilot_cont_500_p_scaffold_81953 2 1095 bp 62.74 1.78 111.78
scnpilot_cont_500_p_scaffold_72711 3 1187 bp 52.99 3.41 111.71
scnpilot_cont_500_p_scaffold_55347 2 1418 bp 45.56 8.04 111.71
scnpilot_cont_500_p_scaffold_59707 3 1349 bp 64.42 2.34 111.64
scnpilot_cont_500_p_scaffold_92859 2 1006 bp 49.60 3.58 111.53
scnpilot_cont_500_p_scaffold_112006
Species: R_Alphaproteobacteria_66_14 (100%)
2 1222 bp 66.78 2.58 111.46
scnpilot_cont_500_p_scaffold_58379 3 1369 bp 67.13 6.03 111.32
scnpilot_cont_500_p_scaffold_82899 3 1087 bp 66.15 1.66 111.22
Displaying items 1-50 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.