ggKbase home page

scnpilot_cont_500_p_scaffold_0

Search features with annotation key words

Displaying items 121-150 of 776 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_0_121
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144627..145883)
DNA (1257bp) protein (419aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1088721 speci
Transcription termination factor Rho n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBH4_9SPHN rbh
transcription termination factor Rho
scnpilot_cont_500_p_scaffold_0_122
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(146269..146733)
DNA (465bp) protein (155aa)
Putative membrane protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GL99_9SPHN
Scaffold4, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32757.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
membrane protein
scnpilot_cont_500_p_scaffold_0_123
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(146814..147839)
DNA (1026bp) protein (342aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Novosphingobium sp. AP12 RepID=J2P8G7_9SPHN rbh
scnpilot_cont_500_p_scaffold_0_124
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148167..149009
DNA (843bp) protein (281aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L9D8_9SPHN rbh
hypothetical protein
scnpilot_cont_500_p_scaffold_0_125
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

149009..149593
DNA (585bp) protein (195aa)
Maf-like protein NT2_04_03430 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YK70_9SPHN
Maf-like protein EH32_10170 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythr
nucleotide-binding protein
scnpilot_cont_500_p_scaffold_0_126
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

149590..150447
DNA (858bp) protein (286aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZU84_9SPHN rbh
scnpilot_cont_500_p_scaffold_0_127
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

150444..151058
DNA (615bp) protein (205aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=555793 species="Bacteria; Pr
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CB34_9SPHN
scnpilot_cont_500_p_scaffold_0_128
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

151118..151810
DNA (693bp) protein (231aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:CCA94433.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CCA94433.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphi
DNA polymerase III subunit epsilon n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKJ2_9SPHN rbh
scnpilot_cont_500_p_scaffold_0_129
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

151845..152411
DNA (567bp) protein (189aa)
Ribosome-associated protein Y n=2 Tax=Novosphingobium RepID=F6IKJ1_9SPHN
30S ribosomal protein S30
Ribosome-associated protein Y {ECO:0000313|EMBL:EHJ61360.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novos
scnpilot_cont_500_p_scaffold_0_130
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

152611..153069
DNA (459bp) protein (153aa)
Nitrogen regulatory IIA n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0ISG6_9SPHN
Scaffold4, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32751.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
PTS IIA-like nitrogen-regulatory protein PtsN
scnpilot_cont_500_p_scaffold_0_131
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

153120..153416
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CB38_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIZ81137.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
scnpilot_cont_500_p_scaffold_0_132
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

153615..154226
DNA (612bp) protein (204aa)
Cell wall hydrolase SleB n=1 Tax=Sphingomonas sp. LH128 RepID=J8VS15_9SPHN
Cell wall hydrolyses {ECO:0000313|EMBL:GAO54343.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobiu
cell wall hydrolase, SleB
scnpilot_cont_500_p_scaffold_0_133
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

154501..155787
DNA (1287bp) protein (429aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogena
glutamate-5-semialdehyde dehydrogenase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HK75_9SPHN rbh
scnpilot_cont_500_p_scaffold_0_134
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

155814..156440
DNA (627bp) protein (209aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244};
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HHS0_9SPHN rbh
nicotinate-nucleotide adenylyltransferase
scnpilot_cont_500_p_scaffold_0_135
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

156541..156948
DNA (408bp) protein (136aa)
Ribosomal silencing factor RsfS n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCB6_NOVAD
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="N
Iojap-like protein
scnpilot_cont_500_p_scaffold_0_136
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

157003..157425
DNA (423bp) protein (141aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Sphingomonas sp. LH128 RepID=J8VNK2_9SPHN
50S rRNA methyltransferase
scnpilot_cont_500_p_scaffold_0_137
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

157429..158643
DNA (1215bp) protein (405aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBN8_9SPHN rbh
metalloendopeptidase
Uncharacterized protein {ECO:0000313|EMBL:EHJ61320.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
scnpilot_cont_500_p_scaffold_0_138
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

158721..160058
DNA (1338bp) protein (446aa)
Peptidase S41 n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HK70_9SPHN rbh
Peptidase S41 {ECO:0000313|EMBL:EQB12578.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium linda
peptidase S41
scnpilot_cont_500_p_scaffold_0_139
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

160060..160527
DNA (468bp) protein (156aa)
Disulfide bond formation protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IKE4_9SPHN
Disulfide bond formation protein {ECO:0000313|EMBL:EQB12210.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphing
disulfide bond formation protein DsbB
scnpilot_cont_500_p_scaffold_0_140
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

160529..161047
DNA (519bp) protein (173aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rul
Ubiquinone biosynthesis protein COQ7 n=1 Tax=Sphingomonas sp. LH128 RepID=J8SJJ5_9SPHN
ubiquinone biosynthesis protein COQ7
scnpilot_cont_500_p_scaffold_0_141
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

161157..161765
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L094_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ77649.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
scnpilot_cont_500_p_scaffold_0_142
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(161781..162554)
DNA (774bp) protein (258aa)
Exodeoxyribonuclease III n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HKB8_9SPHN rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:KHK89616.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphing
exodeoxyribonuclease III
scnpilot_cont_500_p_scaffold_0_143
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(162805..163143)
DNA (339bp) protein (113aa)
Heme biosynthesis protein HemY n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0ISH1_9SPHN
Heme biosynthesis protein HemY {ECO:0000313|EMBL:EQB12629.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novo
HesB/YadR/YfhF
scnpilot_cont_500_p_scaffold_0_144
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163214..163642)
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKI4_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA94425.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
scnpilot_cont_500_p_scaffold_0_145
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

163826..164125
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GL33_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL23338.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_cont_500_p_scaffold_0_146
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(164107..164478)
DNA (372bp) protein (124aa)
Ferredoxin, 2Fe-2S, putative n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBF6_9SPHN
ferredoxin
Ferredoxin, 2Fe-2S, putative {ECO:0000313|EMBL:EHJ61381.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
scnpilot_cont_500_p_scaffold_0_147
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(164469..164900)
DNA (432bp) protein (144aa)
Putative thioesterase n=1 Tax=Novosphingobium sp. AP12 RepID=J2G167_9SPHN
Blr5884 {ECO:0000313|EMBL:GAO54466.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thioesterase superfamily protein
scnpilot_cont_500_p_scaffold_0_148
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(164940..165368)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VW95_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS47748.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
hypothetical protein
scnpilot_cont_500_p_scaffold_0_149
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(165411..166874)
DNA (1464bp) protein (488aa)
Type I secretion outer membrane protein, TolC n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBY8_NOVAD rbh
Type I secretion outer membrane protein, tolC {ECO:0000313|EMBL:GAO54463.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.
Type I secretion outer membrane protein, TolC
scnpilot_cont_500_p_scaffold_0_150
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(166874..167479)
DNA (606bp) protein (202aa)
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKH9_9SPHN
Scaffold4, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32742.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
protein-L-isoaspartate O-methyltransferase
Displaying items 121-150 of 776 in total

View Taxonomy