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scnpilot_cont_500_p_scaffold_437_26

Organism: SCNPILOT_CONT_500_P_Pseudonocardia_73_10

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: 21710..22270

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LUS2_ACIC1 similarity UNIREF
DB: UNIREF100
  • Identity: 53.8
  • Coverage: 184.0
  • Bit_score: 181
  • Evalue 7.50e-43
Sigma-70 region 2 domain protein {ECO:0000313|EMBL:CCH77817.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7. similarity UNIPROT
DB: UniProtKB
  • Identity: 52.9
  • Coverage: 191.0
  • Bit_score: 185
  • Evalue 9.50e-44
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 53.5
  • Coverage: 185.0
  • Bit_score: 181
  • Evalue 2.10e-43

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Taxonomy

Tetrasphaera japonica → Tetrasphaera → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 561
GTGGACCAGAGCGAGGTGGCAGCCACCGTGCGTCGGGCGGCTGCCGGGGACCACGCGGCGTGGGATGCGCTCGTCGACGGCTTCGGCTCGATGGTGTGGGCCGTCACGTCGGGTTACCGGCTGGGCCGGGCGGACACCGCGGAGGTCGTCCAGACCACGTGGCTGCGGCTGGTGGAGAACCTGGACCGGATCACGCAGCCCGAGGCCGTCGGGGCCTGGCTGGCCACGACGGCCCGGCGCGAGGCGTTGCGGATGGTGAAGCTGCGGGGGCGGGAGATCGTCACCGACGACGAGTCCCGGCTGAGCCGGGACGACGTGCCCGGGCAGTTCCCGGATCCCGAGGCCCACGTGCTCACCGCCGACCGCGACCGCCGGCTGTGGGACGCGTTCGAGCGGCTGCCGGACAGGTGCCGGGCCCTGCTGCGGCTGCTGATGCTCGTCGAGCCGCGGTACGCGGAGGTGGCGGCGGCCCTCGACATGCCGATCGGCAGCATCGGGCCCACGCGGGCCCGCTGCCTGGACCGGCTGCGCCGGCTGCTCGGCGACGAGGGGGGTGCCTGA
PROTEIN sequence
Length: 187
VDQSEVAATVRRAAAGDHAAWDALVDGFGSMVWAVTSGYRLGRADTAEVVQTTWLRLVENLDRITQPEAVGAWLATTARREALRMVKLRGREIVTDDESRLSRDDVPGQFPDPEAHVLTADRDRRLWDAFERLPDRCRALLRLLMLVEPRYAEVAAALDMPIGSIGPTRARCLDRLRRLLGDEGGA*