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scnpilot_cont_500_p_scaffold_2236_28

Organism: SCNPILOT_CONT_500_P_Pseudonocardia_73_10

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(24093..24542)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, ECF subfamily n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0KZN3_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 66.9
  • Coverage: 142.0
  • Bit_score: 194
  • Evalue 6.90e-47
RNA polymerase sigma factor, ECF subfamily {ECO:0000313|EMBL:CCH17030.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospo similarity UNIPROT
DB: UniProtKB
  • Identity: 66.9
  • Coverage: 142.0
  • Bit_score: 194
  • Evalue 9.60e-47
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 69.6
  • Coverage: 138.0
  • Bit_score: 191
  • Evalue 1.60e-46

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Taxonomy

Micromonospora lupini → Micromonospora → Micromonosporales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 450
ATGCAGATGTACGCCACGAGGTTGCTCGGTGACCCGGTCGCCGCGGAGGACGTCGTCCAGGAGGCGCTCATCCGCCTCTGGCGCCATCCCGAGGTGCTCGACAACGGCCGGGGCTCGGTCCGTGGGTGGCTGCTCACCGTGATCCGCAACATCGTGATCGACGGTGCGCGGGCCCGCGGCGCGCGGCCCGCGGAGGTCCCCGAGGACCCCACCGCGCCGCCCGTCCAACGCGACCACGCCGACGCCGTGGCCACGTCGGTCACCGTCCACGAGGCGCTCGGGCGGCTCTCGCCGGAGCACCGCGCGGTGCTGGAGCAGATCCACCTGCACGGCCGCAACCTCGACGAGGCGGCCCGGGCGCTCGGCGTGCCGAAGGGCACCGTGAAGTCCCGCACCTTCTACGCCATCCGGGCCCTGCGCGAGCTCATGACCACGGGGCGGCGCTCGTGA
PROTEIN sequence
Length: 150
MQMYATRLLGDPVAAEDVVQEALIRLWRHPEVLDNGRGSVRGWLLTVIRNIVIDGARARGARPAEVPEDPTAPPVQRDHADAVATSVTVHEALGRLSPEHRAVLEQIHLHGRNLDEAARALGVPKGTVKSRTFYAIRALRELMTTGRRS*