ggKbase home page

scnpilot_p_inoc_scaffold_1033_11

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(7845..8477)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Afipia sp. 1NLS2 RepID=D6V466_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 91.0
  • Coverage: 210.0
  • Bit_score: 384
  • Evalue 8.60e-104
  • rbh
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EFI52746.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Af similarity UNIPROT
DB: UniProtKB
  • Identity: 91.0
  • Coverage: 210.0
  • Bit_score: 384
  • Evalue 1.20e-103
FecI-like sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 61.1
  • Coverage: 211.0
  • Bit_score: 247
  • Evalue 2.70e-63

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 633
ATGACCGAGCGAAACGGTCGCCCGCCGCTGCTTAGGCTCGTCGGCAGCGACGGTGACGCCGCACCTGCCGTTCCCGAGCCCACCGCCCGTGACACCGACTGGGCGATCCTGATGGCCCATGCCCAGGACGGCGACAGGTCGGCCTACCAGCGCTTGCTGCAGGAGATCACGCCGTATCTGCGCTCGCTGGCGGCACGCCGGCATCGCGATCCGAGCGACATCGAGGACGCGGTGCAGGACATCCTGCTGACCGTCCACGCGATCCGGCATACGTTCGATCCGACCAGGCCATTCGGTCCGTGGCTCGTGACGATCGCGAACCGGCGGTTCATCGACCGGCTCCGACGGCAGGGGCGCAGGCGCAACCGGGAAACCCCGCTGACGCCCGAGCATGAAACCTTCGCCGAACCTCAGGCGAACCTTGAAGAGACACCCGACAGACGCGAACTCGAAAAGGCGATCGACGAGCTTTCCCCCATGCAGCGCAAGGCAATACAACTACTCAAGCTCAAGGAGATGTCGTTGAGGGAGGCCTCGACGGCGAGCGGAATGTCCATCGCAGCGCTCAAGGTCAACGTGCATCGGGCGGTAAAGAGCCTGCGGAAGATCCTGGGCGATCGGAGCGAGCCATGA
PROTEIN sequence
Length: 211
MTERNGRPPLLRLVGSDGDAAPAVPEPTARDTDWAILMAHAQDGDRSAYQRLLQEITPYLRSLAARRHRDPSDIEDAVQDILLTVHAIRHTFDPTRPFGPWLVTIANRRFIDRLRRQGRRRNRETPLTPEHETFAEPQANLEETPDRRELEKAIDELSPMQRKAIQLLKLKEMSLREASTASGMSIAALKVNVHRAVKSLRKILGDRSEP*