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scnpilot_p_inoc_scaffold_4193_7

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(7049..7969)

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A90B1C similarity UNIREF
DB: UNIREF100
  • Identity: 47.4
  • Coverage: 304.0
  • Bit_score: 282
  • Evalue 3.90e-73
bacterial regulatory helix-turn-helix , lysR family protein similarity KEGG
DB: KEGG
  • Identity: 44.7
  • Coverage: 304.0
  • Bit_score: 272
  • Evalue 1.10e-70
LysR family transcriptional regulator {ECO:0000313|EMBL:ELT48593.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactr similarity UNIPROT
DB: UniProtKB
  • Identity: 44.4
  • Coverage: 304.0
  • Bit_score: 272
  • Evalue 5.70e-70

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Taxonomy

Ochrobactrum intermedium → Ochrobactrum → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 921
GTGAACATACGCTTCCTGCAAACCGTGGTGTGGCTCGCCGAACTGCGCAGTTTCAGGGTAACGGCCGAGCGTATGAATATTACGCCGGCCGCCATTTCCAGCCGCGTAGCCGCACTGGAACAGGAACTCGGATTTCGTCTTTTTGAGCGGGATTCCCGCGATGTCCGGCCGACGCTCATCGGCGCGCGGTTTATCGAGGGCGCGAGAGATATCGTGCAGCGTTACGACCAGCTGCTCGACGACACCAGCCAGGCGCTCGAACCCGATGGCGACATCCGAATAGGTGTGCTTCCCAGCATGGCCTCCACGCTGCTTCCCTCGATCATAAGCACGCTGCGCGAGCGATTTCCCCGCATCCGCGTATCCATCAGCACAGAGTCATCCCCGACCATTCTGCACCACCTGGAGCATCGCGAACTCGACATCATCCTGGGCTTTCCCGGAACAGACCACGCCCTTTACCGCATTACGCCTCTTTGTCGCTTTCAGATGATATGGGTTTCGAGCAAGGACTATCCGTCTGACGACGATCCGCTCGTGCGCGTGGAAAGGCTACGAGCCTCGCCAATCATCTCCTATCAGGTGGGCACTCAGAACCACCGCCGGCTGAGCGACTATATGTTGAAGGCAAGCTTCGAGGAGGCCATCGTGCACTACTCCAACTCTCTTGCGACGACAATCGGTATGGTCAGTGCCGGCATAGGTCTATCGGTGCTGCCTGCGGCAACCATAGGCGCAGAAGTGCGCGCTGGGACGCTCAAGGCGCTTGAAGTAGAGCAGAATTTCCCACCAACGGACTATTTCGCGGTGTGTCTGCAACCCCCCACATCCCGCTTTGCGCCTAAAGTTGCTGCAATCGCTGCGGAATGTGCCGAGGCATTTTGCGCACGAGTAGGTCCTGGCATTGCGACGATGCTTTAG
PROTEIN sequence
Length: 307
VNIRFLQTVVWLAELRSFRVTAERMNITPAAISSRVAALEQELGFRLFERDSRDVRPTLIGARFIEGARDIVQRYDQLLDDTSQALEPDGDIRIGVLPSMASTLLPSIISTLRERFPRIRVSISTESSPTILHHLEHRELDIILGFPGTDHALYRITPLCRFQMIWVSSKDYPSDDDPLVRVERLRASPIISYQVGTQNHRRLSDYMLKASFEEAIVHYSNSLATTIGMVSAGIGLSVLPAATIGAEVRAGTLKALEVEQNFPPTDYFAVCLQPPTSRFAPKVAAIAAECAEAFCARVGPGIATML*