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scnpilot_p_inoc_scaffold_11872_3

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(1515..1784)

Top 3 Functional Annotations

Value Algorithm Source
Ribose transport system permease protein RbsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH24_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 74.8
  • Coverage: 111.0
  • Bit_score: 142
  • Evalue 1.90e-31
Ribose/xylose/arabinose/galactoside ABC-type transport system permease component {ECO:0000313|EMBL:EYR78663.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizo similarity UNIPROT
DB: UniProtKB
  • Identity: 75.7
  • Coverage: 111.0
  • Bit_score: 143
  • Evalue 1.20e-31
ABC transporter permease similarity KEGG
DB: KEGG
  • Identity: 72.1
  • Coverage: 111.0
  • Bit_score: 136
  • Evalue 4.90e-30

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 270
GTGCCGGTCAAGCGCGTGAAAATCACCGTCTATGTGCTGTCGGGCGTCTGCGCCGCCGTTGCCGGCCTGGTGCTGTCCTCGCAGCTCACCTCCGCAGGTCCGACGGCCGGCACGACCTACGAACTGACGGCGATCGCCGCTGTCGTGATCGGCTTTCTGTCGGACGGCCTCGTGATCATCGGCGTTTCGGCCTACTGGCAGACGGTTTTCACCGGCGCCGTGATCGTCACCGCCGTTCTGTTGAACAGCATCAAATACGGCCGTCGTTAG
PROTEIN sequence
Length: 90
VPVKRVKITVYVLSGVCAAVAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGFLSDGLVIIGVSAYWQTVFTGAVIVTAVLLNSIKYGRR*