ggKbase home page

scnpilot_p_inoc_scaffold_15031_4

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: 1741..2064

Top 3 Functional Annotations

Value Algorithm Source
Type IV secretory pathway, VirB2 component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHH5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 69.2
  • Coverage: 107.0
  • Bit_score: 147
  • Evalue 9.10e-33
Type IV secretory pathway, VirB2 component {ECO:0000313|EMBL:EYR82772.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella similarity UNIPROT
DB: UniProtKB
  • Identity: 69.2
  • Coverage: 107.0
  • Bit_score: 147
  • Evalue 1.30e-32
conjugal transfer protein trbc similarity KEGG
DB: KEGG
  • Identity: 42.0
  • Coverage: 88.0
  • Bit_score: 69
  • Evalue 5.20e-10

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 324
ATGAGCAATACCCCGATCACGCCGCGCCCGCGCGGTAAGGCCGTCCTGTCGCTGGCGCTGCTCGCGACGACGATCGCCCTGGTGCCCGAACTTGCCTATGCGCAATCGGCGGCGCCCGTCGAAGGCATCCTCGAATGGTTCGTCGGTGTTCTGCAGGGCAGTGTCGCACGATCACTCGCTATCATCGCCGTCTGCTTCCTCGGCTTCCTGTTCCTGACCGGCCGCATGGCCTGGCAGGGCGCGATCTCCATCGTCATCGGCATCGCCATCATCTTCGGCGCCGCCGAACTGGTCGACGCCATGAAGGCGGCAGGGGGTGTCTGA
PROTEIN sequence
Length: 108
MSNTPITPRPRGKAVLSLALLATTIALVPELAYAQSAAPVEGILEWFVGVLQGSVARSLAIIAVCFLGFLFLTGRMAWQGAISIVIGIAIIFGAAELVDAMKAAGGV*