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scnpilot_p_inoc_scaffold_18954_3

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(2157..2786)

Top 3 Functional Annotations

Value Algorithm Source
Regulatory protein TetR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0N4_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 90.4
  • Coverage: 209.0
  • Bit_score: 360
  • Evalue 1.00e-96
  • rbh
TetR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 90.4
  • Coverage: 209.0
  • Bit_score: 360
  • Evalue 2.90e-97
Regulatory protein TetR {ECO:0000313|EMBL:ADU36735.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus ( similarity UNIPROT
DB: UniProtKB
  • Identity: 90.4
  • Coverage: 209.0
  • Bit_score: 360
  • Evalue 1.40e-96

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 630
ATGAGCGAAACCATCGAAAAGGCAGTCACGCCGAAGTCTCCCGAGGGCCCCGGGAGCGAGCATTACAACCGGCTGCTCCAGGGCATGGCGCAGGCGGTGGCGGCCAAGGGCTACGCCGAGACGACCATCGCGGACATCGTGCGCGAGGCCGCCGTGTCGCGCCGTACCTTCTACGAGCATTTCAGCACCAAGACCGAGTGCCTGATCGCGCTCTACGAAACCGCGAGCCGGCTTGCGCTGCAGGCGGTGAGTGAAGCCTTCGACCCGGTGCAGCCCTGGCATGCGCAGGTCGAGCAGGCCATGACGGCGTATTTCGATTACCTCGCGCAAGATCCGGTTCTGCTGCGCACGCTCTTCGTGGAAATCCTCGGGCTGGGCATGCCGGGGCTGGTGGTGCGGCGCCGCGTGAACGACGAGATCGCCAACTTCATCCAGGTCGCGATCAACAGCGCCGGCTGCGCCGAAGAGCCCGCTGCGCACCTGACGAGCGAAATGGCGATGACGGTGGTCGGCGGCATCAACGAACTGGTGCTGCAGGCCATCGAGCAGGACCGCGCGGGCGATCTGCGCGAACTGGTGGTGCCCGCGACGCGGCTGGTGCGTGCTGTGGCGGCCGAGAGCCTGCGCTAG
PROTEIN sequence
Length: 210
MSETIEKAVTPKSPEGPGSEHYNRLLQGMAQAVAAKGYAETTIADIVREAAVSRRTFYEHFSTKTECLIALYETASRLALQAVSEAFDPVQPWHAQVEQAMTAYFDYLAQDPVLLRTLFVEILGLGMPGLVVRRRVNDEIANFIQVAINSAGCAEEPAAHLTSEMAMTVVGGINELVLQAIEQDRAGDLRELVVPATRLVRAVAAESLR*