ggKbase home page

scnpilot_p_inoc_scaffold_37218_3

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(1307..1732)

Top 3 Functional Annotations

Value Algorithm Source
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256 similarity UNIPROT
DB: UniProtKB
  • Identity: 92.8
  • Coverage: 138.0
  • Bit_score: 266
  • Evalue 2.50e-68
rRNA methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00037B5B66 similarity UNIREF
DB: UNIREF100
  • Identity: 91.0
  • Coverage: 145.0
  • Bit_score: 269
  • Evalue 2.70e-69
TrmH family RNA methyltransferase similarity KEGG
DB: KEGG
  • Identity: 90.5
  • Coverage: 137.0
  • Bit_score: 257
  • Evalue 3.00e-66

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 426
GACCAGCACGTCGCCTTCCTGTTCGGCTCCGAGCGTTTCGGCATGCGGAACGAAGACGTCTACCGCTGCAACGTGGCCCTGACCATTCCCACCGACCCGAAATTCGGCTCGCTCAACCTGGGCGCGGCCATCCAGGTGGTGGCCTACGAATGGCGGCTGGCGCTGGGCGGCTACGAGGTGCGGGAGTCCGTCAACCCGGTGCAGGCGGCCGATGCGCAGGCCGTGGCCGGCATGCTCGACCACTGGGAGCGCTCGCTGGTTGATATCGGCTTCCTCGACCCCGAGGCGCCCAAGAAGCTCATGCCGCGGCTGCAGCAGCTCTTCAACCGGGCCCAGCCCACGCCCGAAGAAATCCACATCCTGCGCGGCATCGCCAAGGCCATGAGCGACGCGACCAAGCCGCCCCGCGGCTCCCTGCCTGAATAA
PROTEIN sequence
Length: 142
DQHVAFLFGSERFGMRNEDVYRCNVALTIPTDPKFGSLNLGAAIQVVAYEWRLALGGYEVRESVNPVQAADAQAVAGMLDHWERSLVDIGFLDPEAPKKLMPRLQQLFNRAQPTPEEIHILRGIAKAMSDATKPPRGSLPE*