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scnpilot_p_inoc_scaffold_41012_2

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(398..964)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y1Y7_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 81.4
  • Coverage: 188.0
  • Bit_score: 317
  • Evalue 6.80e-84
  • rbh
RNA polymerase subunit sigma-70 {ECO:0000313|EMBL:ETZ21048.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacte similarity UNIPROT
DB: UniProtKB
  • Identity: 83.5
  • Coverage: 188.0
  • Bit_score: 326
  • Evalue 2.70e-86
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 80.9
  • Coverage: 188.0
  • Bit_score: 316
  • Evalue 5.60e-84
  • rbh

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Taxonomy

Pedobacter sp. V48 → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 567
GTGAGTATAAAGATTAGCAGTTCATTGCCAACAGATAGAGAGGTTGTTTTAGGTATACTCAACAACTCTGTAGATGCATTAAATAAATTGTATGTAGCATATTTTCCGATGGTGCTTCAGTTTATTTTAAATAATAATGGTGATGAGGATGATGCAAAAGATGTTTATCAAGAAGCCATCATTGTGCTGTACAACAAAATAAAAAGTGGAAGCTTTGAACTGAGCAGCAAGCTGAAAACCTACATCTACTCGGTGAGTAGGAGGATTTGGTTGAAGAAATTGGCGCAGCAAAGTAGGAAAACCAATAACATTGCAGATTTTGAAGATGTTTTGGTAGTTGAAGAGGATATGGAGCAGCATGAACAAAAGGACATGCAGTTTGATAAAATGAAAGTGGCTTTGGATAGCTTGGGAGAGCCCTGTAAAACAATTATACAAGATTTTTATATCCATAACCAAACCATGCAAGATATTTGTGAAAAGTTTGGCTACACCAACGCAGATAATGCTAAAACACAGAAGTATAAGTGTTTACAAAGGTTAAAGAAAATATTTTTTCAATCATAG
PROTEIN sequence
Length: 189
VSIKISSSLPTDREVVLGILNNSVDALNKLYVAYFPMVLQFILNNNGDEDDAKDVYQEAIIVLYNKIKSGSFELSSKLKTYIYSVSRRIWLKKLAQQSRKTNNIADFEDVLVVEEDMEQHEQKDMQFDKMKVALDSLGEPCKTIIQDFYIHNQTMQDICEKFGYTNADNAKTQKYKCLQRLKKIFFQS*