ggKbase home page

scnpilot_p_inoc_scaffold_60876_2

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(253..588)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-54 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C167F similarity UNIREF
DB: UNIREF100
  • Identity: 96.4
  • Coverage: 111.0
  • Bit_score: 218
  • Evalue 4.30e-54
30S ribosomal protein S30 similarity KEGG
DB: KEGG
  • Identity: 85.6
  • Coverage: 111.0
  • Bit_score: 198
  • Evalue 7.60e-49
Possible Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:AAZ96485.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; T similarity UNIPROT
DB: UniProtKB
  • Identity: 85.6
  • Coverage: 111.0
  • Bit_score: 198
  • Evalue 3.80e-48

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 336
ATGAATTTGAAGATTTCCGGTCATCACCTGGAAGTGACCCCAGCCATCCGCGACTATGTTTCCGAGAAGCTCAACCGCGTCAAGCGCCATTTCGACCACGTCATCAACCTGAACGTCATCATGCAGGTGGAAAAGCTGGTGCACAAAGTGGAGGCCACCCTGCACGTCAAGGGCCATGATTTCCATGCCAGCAGCGAAGACGGCAACATGTACGCGGCGATCGACCTGCTGGCCGACAAGCTGGACCGTCAGATCGTCAAGCACAAGGAAAAAATCTCGGATTTCCATCAGGACGGCGGCAGTTTGAAGCATCAACCGACGGAAAGCGCCGCCTGA
PROTEIN sequence
Length: 112
MNLKISGHHLEVTPAIRDYVSEKLNRVKRHFDHVINLNVIMQVEKLVHKVEATLHVKGHDFHASSEDGNMYAAIDLLADKLDRQIVKHKEKISDFHQDGGSLKHQPTESAA*