ggKbase | organisms

SCN_pilot_inoc_UNK

In projects: SCNpilot_P_inoc

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.08 Longest contig: 52.25 Kbp Bin length: 103.31 Mbp GC content: 54.97 %

Contigs count: 55990 Features count: 128322 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19

Displaying items 1-50 of 55990 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_p_inoc_scaffold_72943 Class: Alphaproteobacteria (66.67%)	3	1018 bp	62.08	2.36	119.06
scnpilot_p_inoc_scaffold_72637 Species: Ralstonia sp. PBA (50%)	2	1021 bp	56.81	1.18	116.65
scnpilot_p_inoc_scaffold_69520 Species: Geobacter metallireducens (50%)	2	1057 bp	65.56	2.55	116.08
scnpilot_p_inoc_scaffold_71953	2	1029 bp	35.57	1.46	116.04
scnpilot_p_inoc_scaffold_72675	2	1021 bp	46.82	2.35	115.77
scnpilot_p_inoc_scaffold_69225 Species: Mesorhizobium plurifarium (50%)	2	1061 bp	71.25	1.84	115.36
scnpilot_p_inoc_scaffold_48214 Domain: Bacteria (50%)	4	1410 bp	49.57	1.28	114.47
scnpilot_p_inoc_scaffold_57964 Order: Sphingomonadales (50%)	4	1217 bp	57.03	1.73	114.38
scnpilot_p_inoc_scaffold_74373	2	1002 bp	45.71	1.00	114.07
scnpilot_p_inoc_scaffold_63444 Species: Mesorhizobium sp. ORS3324 (50%)	2	1134 bp	65.34	2.12	114.02
scnpilot_p_inoc_scaffold_46867 Species: Shewanella denitrificans (50%)	2	1442 bp	41.40	1.87	113.38
scnpilot_p_inoc_scaffold_47061 Species: Shinella sp. DD12 (66.67%)	3	1437 bp	67.36	3.97	113.36
scnpilot_p_inoc_scaffold_62753 Species: Bosea sp. LC85 (50%)	2	1144 bp	62.06	2.49	113.29
scnpilot_p_inoc_scaffold_69866 Species: RBG_13_Chloroflexi_54_9_curated (50%)	2	1053 bp	59.16	2.56	112.82
scnpilot_p_inoc_scaffold_55622	3	1258 bp	44.59	1.43	112.80
scnpilot_p_inoc_scaffold_62342 Species: Sphingobium chinhatense (50%)	2	1150 bp	64.09	2.61	112.70
scnpilot_p_inoc_scaffold_65031 Species: Comamonadaceae bacterium B1 (66.67%)	3	1113 bp	59.66	3.64	112.40
scnpilot_p_inoc_scaffold_59714 Species: Micromonas sp. RCC299 (50%)	2	1189 bp	69.72	4.16	112.28
scnpilot_p_inoc_scaffold_67579	3	1080 bp	35.37	2.36	112.22
scnpilot_p_inoc_scaffold_60467 Species: Caulobacter vibrioides (50%)	2	1177 bp	59.39	2.04	112.15
scnpilot_p_inoc_scaffold_61300 Species: Rhizobium freirei (50%)	2	1164 bp	63.75	2.58	111.86
scnpilot_p_inoc_scaffold_54504 Species: Agrobacterium tumefaciens (50%)	2	1278 bp	57.82	2.46	111.50
scnpilot_p_inoc_scaffold_42920 Species: Rhizobium etli (50%)	2	1546 bp	64.94	2.72	111.38
scnpilot_p_inoc_scaffold_80838 Order: Burkholderiales (100%)	3	1638 bp	71.73	3.85	111.36
scnpilot_p_inoc_scaffold_44320	2	1507 bp	65.10	13.84	111.28
scnpilot_p_inoc_scaffold_60937 Species: GWF1_Rhodobacteraceae_65_7_curated (50%)	2	1170 bp	69.83	2.82	110.51
scnpilot_p_inoc_scaffold_69420 Species: Arthrobacter phenanthrenivorans (50%)	2	1058 bp	59.55	1.98	110.30
scnpilot_p_inoc_scaffold_74513	2	1001 bp	51.05	1.20	110.29
scnpilot_p_inoc_scaffold_72933 Class: Betaproteobacteria (66.67%)	3	1423 bp	62.83	23.51	110.26
scnpilot_p_inoc_scaffold_51186 Class: Betaproteobacteria (50%)	4	1344 bp	66.00	3.79	110.04
scnpilot_p_inoc_scaffold_41063 Species: Neochlamydia sp. EPS4 (50%)	2	1602 bp	41.70	1.69	109.93
scnpilot_p_inoc_scaffold_56370 Species: marine sediment metagenome (50%)	2	1245 bp	70.04	16.51	109.88
scnpilot_p_inoc_scaffold_63605 Species: Bacteroides fragilis (50%)	2	1132 bp	54.95	1.59	109.45
scnpilot_p_inoc_scaffold_58011 Species: Sphingobium sp. SYK-6 (50%)	2	1217 bp	63.93	2.34	109.45
scnpilot_p_inoc_scaffold_65989 Species: Hyphomicrobium nitrativorans (50%)	2	1100 bp	62.91	1.91	109.36
scnpilot_p_inoc_scaffold_65197 Species: Sphingobium ummariense (50%)	2	1110 bp	64.86	3.24	109.19
scnpilot_p_inoc_scaffold_66591	2	1092 bp	43.41	1.92	109.07
scnpilot_p_inoc_scaffold_39257	2	2015 bp	67.89	4.17	108.98
scnpilot_p_inoc_scaffold_65726 Species: Variovorax sp. CF313 (50%)	2	1104 bp	70.29	4.35	108.97
scnpilot_p_inoc_scaffold_72696 Species: Shinella sp. DD12 (50%)	2	1021 bp	55.04	2.20	108.72
scnpilot_p_inoc_scaffold_26757 Species: Bacillus cellulosilyticus (66.67%)	3	2258 bp	45.00	1.26	108.55
scnpilot_p_inoc_scaffold_73147 Class: Betaproteobacteria (66.67%)	3	1015 bp	66.50	78.18	108.47
scnpilot_p_inoc_scaffold_53031 Order: Burkholderiales (66.67%)	3	1306 bp	62.79	2.76	108.42
scnpilot_p_inoc_scaffold_67187 Species: Rhizobium gallicum (50%)	2	1085 bp	60.92	2.76	108.39
scnpilot_p_inoc_scaffold_60533	3	1176 bp	38.52	2.42	107.91
scnpilot_p_inoc_scaffold_39326 Species: Microvirga lotononidis (50%)	2	1659 bp	65.64	2.89	107.78
scnpilot_p_inoc_scaffold_60425 Species: Methylobacterium nodulans (50%)	2	1178 bp	64.43	6.37	107.73
scnpilot_p_inoc_scaffold_115086 Species: Agrobacterium tumefaciens (50%)	2	1001 bp	66.03	3.60	107.59
scnpilot_p_inoc_scaffold_62621 Species: Alicycliphilus denitrificans (50%)	2	1146 bp	70.77	2.36	107.59
scnpilot_p_inoc_scaffold_69543 Species: Variovorax paradoxus (50%)	2	1057 bp	65.85	2.27	107.57

Displaying items 1-50 of 55990 in total

SCN_pilot_inoc_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCN_pilot_inoc_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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