ggKbase | organisms

SCN_pilot_inoc_UNK

In projects: SCNpilot_P_inoc

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.08 Longest contig: 52.25 Kbp Bin length: 103.31 Mbp GC content: 54.97 %

Contigs count: 55990 Features count: 128322 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19

Displaying items 54701-54750 of 55990 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_p_inoc_scaffold_63332 Species: Aspergillus ruber (100%)	1	1136 bp	42.34	1.32	99.82
scnpilot_p_inoc_scaffold_41407 Species: Legionella drancourtii (100%)	1	1591 bp	42.87	1.32	99.94
scnpilot_p_inoc_scaffold_63080 Species: Novosphingobium sp. MD-1 (50%)	2	1140 bp	66.40	1.32	87.11
scnpilot_p_inoc_scaffold_63340	2	1136 bp	43.75	1.32	74.47
scnpilot_p_inoc_scaffold_63086 Species: marine sediment metagenome (50%)	2	1139 bp	64.35	1.32	99.82
scnpilot_p_inoc_scaffold_63089 Genus: Legionella (66.67%)	3	1139 bp	45.04	1.32	97.45
scnpilot_p_inoc_scaffold_41424	1	1590 bp	29.69	1.32	8.87
scnpilot_p_inoc_scaffold_35140	1	1816 bp	42.35	1.32	99.78
scnpilot_p_inoc_scaffold_41437 Species: Bacteroides cellulosilyticus (50%)	2	1590 bp	36.98	1.32	95.66
scnpilot_p_inoc_scaffold_63366	1	1136 bp	36.27	1.32	19.01
scnpilot_p_inoc_scaffold_45525 Species: Chlamydia sp. 'Rubis' (100%)	2	1477 bp	33.04	1.32	100.74
scnpilot_p_inoc_scaffold_55879 Species: Nitrolancea hollandica (100%)	2	1253 bp	55.55	1.32	94.33
scnpilot_p_inoc_scaffold_50393 Species: Chryseobacterium gleum (50%)	2	1361 bp	38.43	1.32	98.97
scnpilot_p_inoc_scaffold_55885	3	1253 bp	60.10	1.32	92.18
scnpilot_p_inoc_scaffold_62849	1	1143 bp	26.86	1.31	16.01
scnpilot_p_inoc_scaffold_40863 Species: RBG_19FT_COMBO_Aminicenantes_58_17_curated (50%)	2	1608 bp	37.56	1.31	98.32
scnpilot_p_inoc_scaffold_34709 Species: Mesorhizobium sp. R88B (50%)	2	1833 bp	55.65	1.31	54.50
scnpilot_p_inoc_scaffold_29863 Species: Ralstonia sp. A12 (50%)	2	2068 bp	36.03	1.31	97.78
scnpilot_p_inoc_scaffold_40871	1	1608 bp	40.42	1.31	87.50
scnpilot_p_inoc_scaffold_71822 Species: Pythium ultimum (50%)	2	1031 bp	47.43	1.31	66.34
scnpilot_p_inoc_scaffold_62617	3	1146 bp	69.02	1.31	70.42
scnpilot_p_inoc_scaffold_62630 Species: Niastella koreensis (50%)	2	1146 bp	39.18	1.31	41.10
scnpilot_p_inoc_scaffold_62636 Species: Enhygromyxa salina (100%)	1	1146 bp	48.60	1.31	100.00
scnpilot_p_inoc_scaffold_62641	1	1146 bp	42.15	1.31	64.92
scnpilot_p_inoc_scaffold_62644 Species: Rivularia sp. PCC 7116 (50%)	2	1146 bp	41.97	1.31	98.95
scnpilot_p_inoc_scaffold_62390	2	1149 bp	44.56	1.31	73.11
scnpilot_p_inoc_scaffold_62647 Species: Legionella longbeachae (50%)	2	1146 bp	41.45	1.31	59.95
scnpilot_p_inoc_scaffold_71609	3	1033 bp	55.28	1.31	59.54
scnpilot_p_inoc_scaffold_71865 Species: Chlamydia sp. 'Rubis' (50%)	2	1030 bp	31.75	1.31	98.16
scnpilot_p_inoc_scaffold_62395 Species: Hyphomicrobium denitrificans (100%)	2	1149 bp	59.70	1.31	71.28
scnpilot_p_inoc_scaffold_41012 Genus: Pedobacter (66.67%)	3	1603 bp	34.75	1.31	72.61
scnpilot_p_inoc_scaffold_62927 Species: Nasonia vitripennis (50%)	2	1142 bp	38.88	1.31	64.62
scnpilot_p_inoc_scaffold_62673 Species: Medicago truncatula (50%)	2	1146 bp	47.47	1.31	64.14
scnpilot_p_inoc_scaffold_49827	3	1373 bp	48.43	1.31	81.94
scnpilot_p_inoc_scaffold_62687 Species: Pandoraea pulmonicola (100%)	1	1145 bp	61.92	1.31	99.83
scnpilot_p_inoc_scaffold_49587	1	1379 bp	31.11	1.31	13.71
scnpilot_p_inoc_scaffold_62961 Species: Solitalea canadensis (100%)	1	1141 bp	45.84	1.31	87.55
scnpilot_p_inoc_scaffold_62967 Species: Clavispora lusitaniae (50%)	2	1141 bp	24.63	1.31	80.98
scnpilot_p_inoc_scaffold_49608 Species: Devosia insulae (50%)	2	1378 bp	67.34	1.31	87.74
scnpilot_p_inoc_scaffold_55504 Species: RBG_19FT_COMBO_Nitrospirae_55_12_curated (50%)	2	1260 bp	49.92	1.31	78.10
scnpilot_p_inoc_scaffold_62976	2	1141 bp	44.70	1.31	86.24
scnpilot_p_inoc_scaffold_40990 Species: Porphyromonadaceae bacterium COT-184 OH4590 (50%)	2	1604 bp	35.60	1.31	69.76
scnpilot_p_inoc_scaffold_62471 Species: Chitinophaga pinensis (100%)	1	1149 bp	44.04	1.31	99.74
scnpilot_p_inoc_scaffold_71688	2	1032 bp	55.04	1.31	97.09
scnpilot_p_inoc_scaffold_63010 Species: bacterium YEK0313 (50%)	2	1141 bp	65.47	1.31	99.91
scnpilot_p_inoc_scaffold_62743	3	1145 bp	68.38	1.31	82.53
scnpilot_p_inoc_scaffold_62489	2	1148 bp	63.76	1.31	70.30
scnpilot_p_inoc_scaffold_41099 Species: Paludibacter propionicigenes (50%)	2	1600 bp	45.81	1.31	66.75
scnpilot_p_inoc_scaffold_49648	3	1377 bp	61.73	1.31	66.88
scnpilot_p_inoc_scaffold_62757 Species: Synechococcus sp. JA-3-3Ab (100%)	1	1144 bp	49.91	1.31	58.74

Displaying items 54701-54750 of 55990 in total

SCN_pilot_inoc_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCN_pilot_inoc_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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