ggKbase home page

DolZOral124_scaffold_164

Search features with annotation key words

Displaying items 61-90 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_164_61
Acinetobacter parvus, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56681..59689)
-----------------
DNA (3009bp)
protein (1003aa)
CRISPR-associated helicase cas3 n=1 Tax=Acinetobacter parvus NIPH 1103 RepID=N8RGH7_9GAMM
CRISPR-associated helicase cas3 {ECO:0000313|EMBL:ENU32654.1}; TaxID=1217671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobac
CRISPR-associated endonuclease Cas3-HD
DolZOral124_scaffold_164_62
Gynuella sunshinyii, Gynuella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59697..60650)
-----------------
DNA (954bp)
protein (318aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1445510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospiril
CRISPR-associated protein Cas1 n=1 Tax=zeta proteobacterium SCGC AB-133-C04 RepID=UPI00037824A4
uncharacterized protein predicted to be involved in DNA repair
DolZOral124_scaffold_164_63
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60889..61671)
-----------------
DNA (783bp)
protein (261aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B435EA
conserved hypothetical protein
UPF0246 protein TBH_C2701 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
DolZOral124_scaffold_164_64
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61677..61925)
-----------------
DNA (249bp)
protein (83aa)
ferredoxin n=1 Tax=Leucothrix mucor RepID=UPI0003B631AD
Ferredoxin {ECO:0000313|EMBL:AKH20652.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
Ferredoxin
DolZOral124_scaffold_164_65
Alcanivorax sp. 19-m-6, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62061..62546)
-----------------
DNA (486bp)
protein (162aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
phosphopantetheine adenylyltransferase n=1 Tax=Leucothrix mucor RepID=UPI0003B6407B
DolZOral124_scaffold_164_66
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62574..62954)
-----------------
DNA (381bp)
protein (127aa)
endoribonuclease n=1 Tax=Colwellia piezophila RepID=UPI00036DAB4D
Endoribonuclease L-PSP {ECO:0000313|EMBL:KGJ96811.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea
endoribonuclease L-PSP
DolZOral124_scaffold_164_67
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62980..65139)
-----------------
DNA (2160bp)
protein (720aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
(P)ppGpp synthetase I, SpoT/RelA {ECO:0000313|EMBL:ADC72492.1}; EC=2.7.6.5 {ECO:0000313|EMBL:ADC72492.1};; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorh
bifunctional (p)ppGpp synthetase II/ guanosine-3'''',5''''-bis pyrophosphate 3''''-pyrophosphohydrolase n=1 Tax=Leucothrix mucor RepID=UPI0003B4B49C
DolZOral124_scaffold_164_68
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65210..65473)
-----------------
DNA (264bp)
protein (88aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-R
DNA-directed RNA polymerase subunit omega n=1 Tax=Leucothrix mucor RepID=UPI0003B46146
hypothetical protein
DolZOral124_scaffold_164_69
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65627..66730
-----------------
DNA (1104bp)
protein (368aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF
ferrochelatase (EC:4.99.1.1)
Ferrochelatase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BWN1_9GAMM
DolZOral124_scaffold_164_70
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66727..67485
-----------------
DNA (759bp)
protein (253aa)
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI00037B190C
Molybdopterin binding domain-containing protein {ECO:0000313|EMBL:EIJ35773.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="
molybdopterin binding domain-containing protein
DolZOral124_scaffold_164_71
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67599..68531
-----------------
DNA (933bp)
protein (311aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B36468
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:EIJ35772.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix n
lipid A biosynthesis acyltransferase
DolZOral124_scaffold_164_72
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68616..69401
-----------------
DNA (786bp)
protein (262aa)
transporter n=1 Tax=Leucothrix mucor RepID=UPI0003B6DADB
Auxin Efflux Carrier {ECO:0000313|EMBL:EAR60797.1}; TaxID=207954 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Neptuniibacter.;" source="Neptuniibacter caesariensis.;"
auxin efflux carrier
DolZOral124_scaffold_164_73
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69481..70545
-----------------
DNA (1065bp)
protein (355aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID
histidinol-phosphate aminotransferase n=1 Tax=Leucothrix mucor RepID=UPI0003B6181A
histidinol-phosphate aminotransferase
DolZOral124_scaffold_164_74
unknown

Not on your lists

comp(70719..70952)
-----------------
DNA (234bp)
protein (78aa)

This feature has no annotations

DolZOral124_scaffold_164_75
Chondrus crispus, Chondrus, Gigartinales, Florideophyceae, Eukaryota

Not on your lists

71353..73620
-----------------
DNA (2268bp)
protein (756aa)
Stackhouse genomic scaffold, scaffold_4 n=1 Tax=Chondrus crispus RepID=R7QJ21_CHOCR
Stackhouse genomic scaffold, scaffold_4 {ECO:0000313|EMBL:CDF38079.1}; TaxID=2769 species="Eukaryota; Rhodophyta; Florideophyceae; Gigartinales; Gigartinaceae; Chondrus.;" source="Chondrus crispus (Ca
parallel beta-helix repeat-containing protein
DolZOral124_scaffold_164_76

Not on your lists

comp(73771..75816)
-----------------
DNA (2046bp)
protein (682aa)
tRNA(Met) cytidine acetyltransferase TmcA n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=TMCA_NITHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN61637.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
DolZOral124_scaffold_164_77
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75832..77499)
-----------------
DNA (1668bp)
protein (556aa)
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI00036A49FF
NAD+ synthetase {ECO:0000313|EMBL:EIJ34283.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
NAD+ synthetase
DolZOral124_scaffold_164_78
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77706..78947)
-----------------
DNA (1242bp)
protein (414aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothri
aspartate kinase (EC:2.7.2.4)
aspartokinase n=1 Tax=Leucothrix mucor RepID=UPI0003B2FAF8
DolZOral124_scaffold_164_79
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(78947..81583)
-----------------
DNA (2637bp)
protein (879aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
alanyl-tRNA synthetase n=1 Tax=Leucothrix mucor RepID=UPI0003B633C2
DolZOral124_scaffold_164_80
Marinomonas sp. MWYL1, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81837..82304)
-----------------
DNA (468bp)
protein (156aa)
RecX family transcriptional regulator n=1 Tax=Leucothrix mucor RepID=UPI0003B5933F
regulatory protein RecX
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=400668 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source=
DolZOral124_scaffold_164_81
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(82522..83592)
-----------------
DNA (1071bp)
protein (357aa)
recA; recombinase A (EC:3.6.3.8)
recombinase RecA n=1 Tax=Leucothrix mucor RepID=UPI0003B3FF21
Protein RecA {ECO:0000255|HAMAP-Rule:MF_00268}; Recombinase A {ECO:0000255|HAMAP-Rule:MF_00268}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospirace
DolZOral124_scaffold_164_82
Vibrio tubiashii, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83716..84198)
-----------------
DNA (483bp)
protein (161aa)
hypothetical protein n=1 Tax=Vibrio genomosp. F10 RepID=UPI0002F8BB85
damage-inducible protein CinA
Damage-inducible protein CinA {ECO:0000313|EMBL:AIW15106.1}; TaxID=1051646 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio tubiashii ATCC 19
DolZOral124_scaffold_164_83
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84531..84746
-----------------
DNA (216bp)
protein (72aa)
carbon storage regulator n=1 Tax=Thioalkalivibrio sp. AKL17 RepID=UPI000361D47B
Carbon storage regulator homolog {ECO:0000256|HAMAP-Rule:MF_00167, ECO:0000256|SAAS:SAAS00093889}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; T
carbon storage regulator
DolZOral124_scaffold_164_84
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84829..85497)
-----------------
DNA (669bp)
protein (223aa)
cbbI; ribose-5-phosphate isomerase A (EC:5.3.1.6) Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
ribose 5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase A n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BS11_9GAMM
DolZOral124_scaffold_164_85
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85624..87162
-----------------
DNA (1539bp)
protein (513aa)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=870187 species="Bacteria; Proteobacter
L-threonine dehydratase biosynthetic IlvA n=1 Tax=Thiothrix disciformis RepID=UPI000360740B
L-threonine dehydratase biosynthetic IlvA
DolZOral124_scaffold_164_86
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


87352..87588
-----------------
DNA (237bp)
protein (79aa)
50S ribosomal protein L28 n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DGA3_9GAMM
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thio
DolZOral124_scaffold_164_87
Acinetobacter towneri, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


87622..87777
-----------------
DNA (156bp)
protein (52aa)
50S ribosomal protein L33 n=1 Tax=Leucothrix mucor RepID=UPI0003B476EE
rpmG; 50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1120929 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacte
DolZOral124_scaffold_164_88
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88085..91762)
-----------------
DNA (3678bp)
protein (1226aa)
Pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:KGM48639.1}; EC=1.2.1.88 {ECO:0000313|EMBL:KGM48639.1};; EC=1.5.5.2 {ECO:0000313|EMBL:KGM48639.1};; TaxID=1461694 species="Bacteria; Proteobacte
pyrroline-5-carboxylate dehydrogenase (EC:1.2.1.88 1.5.5.2)
bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase n=1 Tax=Leucothrix mucor RepID=UPI0003B70132
DolZOral124_scaffold_164_89
uncultured gamma proteobacterium, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91925..92737)
-----------------
DNA (813bp)
protein (271aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020854}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule
mutM; Formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
5-hydroxymethyluracil DNA glycosylase n=1 Tax=Leucothrix mucor RepID=UPI0003B37760
DolZOral124_scaffold_164_90
uncultured gamma proteobacterium, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92745..93260)
-----------------
DNA (516bp)
protein (172aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BSD0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AJG38017.1}; TaxID=86473 species="Bacteria; Proteobacteria; Gammaproteobacteria; environmental samples.;" source="uncultured gamma proteobacterium.;"
hypothetical protein
Displaying items 61-90 of 94 in total

View Taxonomy