ggKbase home page

DolZOral124_scaffold_346

Search features with annotation key words

Displaying items 31-60 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_346_31
unknown

Not on your lists

comp(32868..33023)
-----------------
DNA (156bp)
protein (52aa)

This feature has no annotations

DolZOral124_scaffold_346_32
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33206..34525
-----------------
DNA (1320bp)
protein (440aa)
Electron transport complex, RnfABCDGE type, C subunit n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CWB9_CLOSO
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostrid
rnfC; electron transport complex protein
DolZOral124_scaffold_346_33
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34537..35493
-----------------
DNA (957bp)
protein (319aa)
Electron transport complex protein RnfD n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ARR1_9CLOT
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaero
RnfABCDGE type electron transport complex subunit D
DolZOral124_scaffold_346_34
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35493..36062
-----------------
DNA (570bp)
protein (190aa)
RnfG n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GP18_EUBLK
protein RnfG
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosu
DolZOral124_scaffold_346_35
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36074..36988
-----------------
DNA (915bp)
protein (305aa)
Electron transport complex, RnfABCDGE type, E subunit n=3 Tax=Clostridium RepID=E9SLS5_CLOSY
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14
electron transport complex, RnfABCDGE type, E subunit
DolZOral124_scaffold_346_36
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36991..37572
-----------------
DNA (582bp)
protein (194aa)
Electron transport complex, RnfABCDGE type, A subunit n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MHM9_ALKOO
RnfABCDGE type electron transport complex subunit A
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus orem
DolZOral124_scaffold_346_37
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37582..38406
-----------------
DNA (825bp)
protein (275aa)
Electron transport complex, RnfABCDGE type, B subunit n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1F0_9FIRM
Electron transport complex, RnfABCDGE type, B subunit {ECO:0000313|EMBL:EEA84416.1}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" s
RnfABCDGE type electron transport complex subunit B
DolZOral124_scaffold_346_38
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(38484..39185)
-----------------
DNA (702bp)
protein (234aa)
tenA-2; transcriptional activator TenA (EC:3.5.99.2)
Transcriptional activator, TenA family protein n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0E7D9_9EURY
Transcriptional activator, TenA family protein {ECO:0000313|EMBL:ELZ43685.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubr
DolZOral124_scaffold_346_39
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39142..39972)
-----------------
DNA (831bp)
protein (277aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethy
Hydroxyethylthiazole kinase n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C7E8_9FIRM
hydroxyethylthiazole kinase
DolZOral124_scaffold_346_40

Not on your lists

comp(40297..43266)
-----------------
DNA (2970bp)
protein (990aa)
Putative s-layer protein n=1 Tax=Paenibacillus alvei DSM 29 RepID=K4ZSI7_PAEAL
cell surface glycoprotein 2
Cellulosome-anchoring protein {ECO:0000313|EMBL:AIE77274.1}; TaxID=1478040 species="Bacteria; environmental samples.;" source="uncultured bacterium pBIO2079.;"
DolZOral124_scaffold_346_41
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

43536..43862
-----------------
DNA (327bp)
protein (109aa)
Putative helix-turn-helix protein, YlxM/p13-like protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AXU8_CLOA9
helix-turn-helix protein, YlxM/p13-like protein
UPF0122 protein Curi_c16250 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 /
DolZOral124_scaffold_346_42
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


43867..45210
-----------------
DNA (1344bp)
protein (448aa)
Signal recognition particle protein n=7 Tax=Clostridium thermocellum RepID=A3DDH6_CLOTH
signal recognition particle subunit FFH/SRP54 (srp54)
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Rumi
DolZOral124_scaffold_346_43
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


45271..45534
-----------------
DNA (264bp)
protein (88aa)
30S ribosomal protein S16 n=2 Tax=Geobacillus RepID=RS16_GEOTN
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000313|EMBL:KFX36007.1}; TaxID=1422 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus stearothermophilus (Bacillus ste
DolZOral124_scaffold_346_44
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45546..45776
-----------------
DNA (231bp)
protein (77aa)
UPF0109 protein CPC_1955 n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BG00_CLOPF
UPF0109 protein CPC_1955 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str.
hypothetical protein
DolZOral124_scaffold_346_45
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45837..46340
-----------------
DNA (504bp)
protein (168aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAQ0_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptocl
16S rRNA processing protein RimM
DolZOral124_scaffold_346_46
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

46340..47089
-----------------
DNA (750bp)
protein (250aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltrans
trmD; tRNA (guanine-N(1)-)-methyltransferase TrmD (EC:2.1.1.221)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium sp. CAG:343 RepID=R6P7P0_9CLOT
DolZOral124_scaffold_346_47
unknown

Not on your lists

47383..47568
-----------------
DNA (186bp)
protein (62aa)

This feature has no annotations

DolZOral124_scaffold_346_48
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

47578..49038
-----------------
DNA (1461bp)
protein (487aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1403537 species=
Nicotinate phosphoribosyltransferase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LX16_CLOCD
putative nicotinate phosphoribosyltransferase
DolZOral124_scaffold_346_49
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

49025..50383
-----------------
DNA (1359bp)
protein (453aa)
rsmF; ribosomal RNA small subunit methyltransferase F (EC:2.1.1.178)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BZ76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19801.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.
DolZOral124_scaffold_346_50
unknown

Not on your lists

50386..51498
-----------------
DNA (1113bp)
protein (371aa)

This feature has no annotations

DolZOral124_scaffold_346_51
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

51446..51946
-----------------
DNA (501bp)
protein (167aa)
hypothetical protein n=1 Tax=Chloroflexi bacterium oral taxon 439 RepID=UPI0003B5B8AB
hypothetical protein
Tax=BJP_IG2157_Clostridiales_35_16
DolZOral124_scaffold_346_52
Peptostreptococcus sp. MV1, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

51969..53384
-----------------
DNA (1416bp)
protein (472aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB (EC:2.-.-.-)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Peptostreptococcus stomatis DSM 17678 RepID=E0E1A7_9FIRM
DolZOral124_scaffold_346_53
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

53386..56007
-----------------
DNA (2622bp)
protein (874aa)
DNA mismatch repair protein MutS n=1 Tax=Dorea sp. CAG:317 RepID=R6XQH1_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; envir
DNA mismatch repair protein MutS
DolZOral124_scaffold_346_54
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

56010..58013
-----------------
DNA (2004bp)
protein (668aa)
DNA mismatch repair protein MutL n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABG6_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intesti
DNA mismatch repair protein MutL
DolZOral124_scaffold_346_55
Clostridiales bacterium S5-A14a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

58013..58864
-----------------
DNA (852bp)
protein (284aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate
miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EZ46_9FIRM
DolZOral124_scaffold_346_56
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

59264..62365
-----------------
DNA (3102bp)
protein (1034aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0
ileS; isoleucine--tRNA ligase IleS (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CWZ3_9CLOT
DolZOral124_scaffold_346_57
Peptoniphilus sp. oral taxon 375, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


62576..64978
-----------------
DNA (2403bp)
protein (801aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=879308 species="Bacteria; Firmicu
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
leucyl-tRNA synthetase n=1 Tax=Peptoniphilus sp. JC140 RepID=UPI0002F6D1ED
DolZOral124_scaffold_346_58
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

64990..65631
-----------------
DNA (642bp)
protein (214aa)
YheO domain protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TQK4_ALKMQ
YheO domain-containing protein
YheO domain protein {ECO:0000313|EMBL:ABR48472.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain Q
DolZOral124_scaffold_346_59
Candidatus Mycoplasma girerdii, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

65652..66035
-----------------
DNA (384bp)
protein (128aa)
RutC family protein PYRAB12510 n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Y1251_PYRAB
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:AIV03949.1}; TaxID=1318617 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma.;" source="Candidatus Mycoplasma girerdii.;"
DolZOral124_scaffold_346_60
Peptostreptococcaceae bacterium CM5, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

66327..66941
-----------------
DNA (615bp)
protein (205aa)
Putative uncharacterized protein n=1 Tax=Eubacteriaceae bacterium CM5 RepID=G9XCL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL19305.1}; TaxID=796940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium CM5.;"
hypothetical protein
Displaying items 31-60 of 70 in total

View Taxonomy